Gene detail

Detailed information of g545.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_031564357.1, acetylcholine receptor subunit alpha-1-B-like [Actinia tenebrosa]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P05377	Acetylcholine receptor subunit alpha-1-B OS=Xenopus laevis OX=8355 GN=chrna1-b PE=2 SV=1
P09479	Acetylcholine receptor subunit alpha OS=Gallus gallus OX=9031 GN=CHRNA1 PE=1 SV=1
P04756	Acetylcholine receptor subunit alpha OS=Mus musculus OX=10090 GN=Chrna1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0000045 (this species only)
Orthogroup (gene family)	OG0000114 (this species only)
Orthogroup (gene family)	OG0003920 (this species only)
Orthogroup (gene family)	OG0007046 (this species only)
Orthogroup (gene family)	OG0007754 (this species only)
Orthogroup (gene family)	OG0008612 (this species only)
Orthogroup (gene family)	OG0009498 (this species only)
Orthogroup (gene family)	OG0014419 (this species only)
Orthogroup (gene family)	OG0016719 (this species only)
Orthogroup (gene family)	OG0172184 (this species only)
Orthogroup (gene family)	OG0173022 (this species only)
Orthogroup (gene family)	OG0173336 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF00890 all species →	FAD_binding_2	FAD binding domain	Family	Interproscan
PF02910 all species →	Succ_DH_flav_C	Fumarate reductase flavoprotein C-term	Domain	Interproscan
PF07727 all species →	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047227 all species →	Family	RNA-binding protein MEX3	Interproscan
IPR047226 all species →	Domain	RNA-binding protein MEX-3, second type I KH domain	Interproscan
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR047228 all species →	Domain	RNA-binding protein MEX-3, first type I KH domain	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR042319 all species →	Family	Glycoprotein integral membrane protein 1	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR006201 all species →	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR018000 all species →	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR002394 all species →	Family	Nicotinic acetylcholine receptor	Interproscan
IPR003953 all species →	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan
IPR027477 all species →	Homologous_superfamily	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily	Interproscan
IPR015939 all species →	Domain	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal	Interproscan
IPR011281 all species →	Family	Succinate dehydrogenase, flavoprotein subunit	Interproscan
IPR030664 all species →	Family	FAD-dependent oxidoreductase SdhA/FrdA/AprA	Interproscan
IPR014006 all species →	Family	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR037099 all species →	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052510 all species →	Family	Oomycete RxLR Effector	Interproscan
IPR013103 all species →	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23285 all species →	RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR28549 all species →	GLYCOPROTEIN INTEGRAL MEMBRANE PROTEIN 1	Interproscan
PTHR18945 all species →	NEUROTRANSMITTER GATED ION CHANNEL	Interproscan
PTHR11632 all species →	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	Interproscan
PTHR45895 all species →	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0005231 all species →	Molecular Function	excitatory extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0030594 all species →	Molecular Function	neurotransmitter receptor activity	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0050877 all species →	Biological Process	nervous system process	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan
GO:0022848 all species →	Molecular Function	acetylcholine-gated monoatomic cation-selective channel activity	Interproscan
GO:0045211 all species →	Cellular Component	postsynaptic membrane	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0000104 all species →	Molecular Function	succinate dehydrogenase activity	Interproscan
GO:0005749 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	Interproscan
GO:0006121 all species →	Biological Process	mitochondrial electron transport, succinate to ubiquinone	Interproscan
GO:0008177 all species →	Molecular Function	succinate dehydrogenase (quinone) activity	Interproscan
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0022900 all species →	Biological Process	electron transport chain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00234	SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit	EC:1.3.5.1	Non-alcoholic fatty liver disease	ko04932	deepkoala
K15686	MEX3, RKHD; RNA-binding protein MEX3	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.