Detailed information of g545.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_031564357.1, acetylcholine receptor subunit alpha-1-B-like [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P05377Acetylcholine receptor subunit alpha-1-B OS=Xenopus laevis OX=8355 GN=chrna1-b PE=2 SV=1
P09479Acetylcholine receptor subunit alpha OS=Gallus gallus OX=9031 GN=CHRNA1 PE=1 SV=1
P04756Acetylcholine receptor subunit alpha OS=Mus musculus OX=10090 GN=Chrna1 PE=1 SV=1
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00013KH_1KH domainDomainInterproscan
PF13920zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF02931Neur_chan_LBDNeurotransmitter-gated ion-channel ligand binding domainFamilyInterproscan
PF00890FAD_binding_2FAD binding domainFamilyInterproscan
PF02910Succ_DH_flav_CFumarate reductase flavoprotein C-termDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047227FamilyRNA-binding protein MEX3Interproscan
IPR047226DomainRNA-binding protein MEX-3, second type I KH domainInterproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR047228DomainRNA-binding protein MEX-3, first type I KH domainInterproscan
IPR004087DomainK Homology domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR042319FamilyGlycoprotein integral membrane protein 1Interproscan
IPR006202DomainNeurotransmitter-gated ion-channel ligand-binding domainInterproscan
IPR036734Homologous_superfamilyNeurotransmitter-gated ion-channel ligand-binding domain superfamilyInterproscan
IPR006201FamilyNeurotransmitter-gated ion-channelInterproscan
IPR036719Homologous_superfamilyNeurotransmitter-gated ion-channel transmembrane domain superfamilyInterproscan
IPR018000Conserved_siteNeurotransmitter-gated ion-channel, conserved siteInterproscan
IPR038050Homologous_superfamilyNeuronal acetylcholine receptorInterproscan
IPR002394FamilyNicotinic acetylcholine receptorInterproscan
IPR003953DomainFAD-dependent oxidoreductase 2, FAD binding domainInterproscan
IPR027477Homologous_superfamilySuccinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamilyInterproscan
IPR015939DomainFumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminalInterproscan
IPR011281FamilySuccinate dehydrogenase, flavoprotein subunitInterproscan
IPR030664FamilyFAD-dependent oxidoreductase SdhA/FrdA/AprAInterproscan
IPR014006FamilySuccinate dehydrogenase/fumarate reductase, flavoprotein subunitInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR037099Homologous_superfamilyFumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR052510FamilyOomycete RxLR EffectorInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR23285RING FINGER AND KH DOMAIN CONTAINING PROTEIN 1Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR28549GLYCOPROTEIN INTEGRAL MEMBRANE PROTEIN 1Interproscan
PTHR18945NEUROTRANSMITTER GATED ION CHANNELInterproscan
PTHR11632SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNITInterproscan
PTHR45895INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005230Molecular Functionextracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0034220Biological Processmonoatomic ion transmembrane transportInterproscan
GO:0005231Molecular Functionexcitatory extracellular ligand-gated monoatomic ion channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0007268Biological Processchemical synaptic transmissionInterproscan
GO:0030594Molecular Functionneurotransmitter receptor activityInterproscan
GO:0042391Biological Processregulation of membrane potentialInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0045202Cellular ComponentsynapseInterproscan
GO:0050877Biological Processnervous system processInterproscan
GO:1904315Molecular Functiontransmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potentialInterproscan
GO:0022848Molecular Functionacetylcholine-gated monoatomic cation-selective channel activityInterproscan
GO:0045211Cellular Componentpostsynaptic membraneInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0006099Biological Processtricarboxylic acid cycleInterproscan
GO:0016627Molecular Functionoxidoreductase activity, acting on the CH-CH group of donorsInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0000104Molecular Functionsuccinate dehydrogenase activityInterproscan
GO:0005749Cellular Componentobsolete mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)Interproscan
GO:0006121Biological Processmitochondrial electron transport, succinate to ubiquinoneInterproscan
GO:0008177Molecular Functionsuccinate dehydrogenase (quinone) activityInterproscan
GO:0009055Molecular Functionelectron transfer activityInterproscan
GO:0022900Biological Processelectron transport chainInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15686MEX3, RKHD; RNA-binding protein MEX3EC:2.3.2.27
Non-alcoholic fatty liver diseaseko04932deepkoala
Ubiquitin systemko04121deepkoala

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