Gene detail

Detailed information of g5477.t1 in Acropora digitifera

Genomic Location: chr3Alt:3697449...3727362
NR annotation: XP_044169178.1, attractin-like protein 1 isoform X1 [Acropora millepora]
Species abbreviation ADIGI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5477.t1

ATGAGAGGAATATGTATCTGTAATTCTGGGTGGTGGGGAAACTTCTGTCAGTTTTGTCGTTTGAGATTGTCCGTCGATAATGGTGAAATTAATGATGGACATGGTGCCTATGCTAGGAGTTCCAAATGTTCCTGGCTTATAGAATCTCCCAGGCCGAATAGTACCATTCATTTAGATCTCAAAATGTTTGCTACTGAATGTAACTGGGATCACCTTTATATCTATGATGGCAATTCTGTCAAAAGTCCCTTAATAGCAGTGCTAAGTGGGATCATAAAGGACCCAAAGAGAGGGAATTTTGAGCAAAGTCTCATGCTACGAGCCAATTCTGGCTCAGCGCTCTTGTACTTTTACAGTGACAAGTTCTACAATGAGAAGGGATTCAAAATAAAATACAGCATATCAACAGATTGTTCAGCCAAATGCAGTTTTCATGGTTCTTGTGGCAAGAAAGAGCAGTGCATTTGTGATTCTGGATGGACAGGTGCTCATTGCGACATTCAAACCTGCATTGCTGATTGTGTGAATGGATTTTGCAGCAATGACACAAGATTATGTGTCTGTTATCCTGGTTTTTATGGTGCCTCATGTAATGTTAGTGGTGAAAGAGCATTCTGGACCCAATATTCCTCAAAAGGAGCAGGTCTTATTCAAGAGCGAGCATCTCATGCTGCTGCAGTCATTGGAGACTACATGTGGGTGTTTGGAGGGTTTTCATTAAACCCAGGGCCATTTGAAAACCTTGTTAGGTATCACATTCCCAGTGATAGCTGGGAGGTTGTGCGGCCTTTTGTTAATAGCACTGCAGTTCCTTCTCAGCGCTATGGCCACTCCATGATTGCTTATAATAGTTCTCTTTATATATTTGGGGGCAGAAATGGCCAACTAGCTACCGATGAGCTGTGGTCCTTTGACACTCGTACACTTATTTGGTCTTTGCTTCCAAGGAAAGGTACCCCACTTCCCGTTGCTGGGCACACAGCCACACTTGTTGATTCCACCATGGTTGTTCTGTTTGGATATGGACAGCGACGGAATTATACAGACAAGGTCCAGGAATTTGATCTGGAAACTGGCACATGGAGCATACATGATGTACCCAAGGATATCATCCATCCAACATTTGCACACAGCAGTGCCTACGATCCAGCAACTGGCATAATCTACATCCATGGTGGATTTTTTGATAATGAACCCAGCACATCACTTGCATCTTATGATCCGACCACAAGAACTTGGCGAGCCCTTGCAAACAGCAGTGTGCCACGGTTCCTTCACACAGCTGTGTTTGTGGATGGAATGATGTTGGTGTTCGGTGGAAACTCCCACAATGGCACCACGAGGATGCCGTCTAACCTATCATGTTTCTCCATGGACTTCCTTGCGTATGACACTGCTTGTGATGAGTGGAAAAAGTTATCACTGCCTGAAAGTTTAAAGTCCTCAGGAAGATACGGTCATTCTGCGGTTGCTTTTAACAGAACCATGTTCGTGTTTGGAGGATTTCAAGGTGTTCTTCTTAAAGACGTCCTTTCATTCACATCTGGTCCATGCGCTCTGATGAGAGACAAGAGTAGTTGTGAAATGAGCTCGAATGTTTCTGGTTGTGTGTGGAATGAAAGGACGTCAACCTGCCTTGGACCAGAACGATGTGCGACTCCGCTGACCAAAGAGCGAGAGAAGTGCCGTAAACTCGGACAGAGCTGTACTAGATGTACCTCCAGTGTGCATGGATGTTCCTGGTGTGAAGGGGAGAAACAGTGTGTCTCAGGAAACTGCCCTAATGGAGCGCCAAAGATAGATTCTCTTGCTAAATGTTCAAGGAATTCAAAGTCCTCATCCTGTCAAGGAACTGATTGTGAGAATAAGGGATGCTATAACCTCAGCTCATGCGAAGACTGCACCAAGGGATCGCTTTGCATGTGGTGTGAGTCTGAGAAACAGTGTGTGGCTAAGAATTCGTATCCAATTTCTTTTCCCTATGGACAGTGCCGCGGTTGGATTGAAGAACTACAATGTTCAGATGAGCGCTGTTCCGGAATGAAAACGTGTGATGAATGCCACACCCTCCCCGGGTGCGGATGGTGTGACGATGGGTCAGGCACCGGCTTGGGCGAGTGCATGGAGGGAGGGAATGATGGCCCTTTTAACAACAGCGATGCAAATGCCGTGACTTCCCAGTGTCCAAACGACCTGTGGTTCTTTGTTGAGTGCCCAGATTGTCAATGCAATGGGCACAGTACGTGTATCAACCGGAACATCTGTGAAAAGTGCCAAGGCCAAACAACTGGGCCCCGCTGTGAGGTTTGCTCACCAGGTCATCATGGGGACCCGAAGAATGGAGGAACCTGCCAGGCTTGTGAGTGCAATGGGCATGCCAACTCATGCGATTCTGTGACTGGCCATTGTAACTGTTTGGCTCGCTATGTGACTGGCAAAAACTGTGAACGCTGCGAAAAGGATGAGAATAGCGATGTAATTGTTGGCAACGCAACAAACGGTGGACACTGTTACAATAAACTTACCAGAAATCTGCGATACACCTTCATTGTTTCGAACAAGACGAGTATTTCTTTCCTGTACATTCCCACAGAGGGTGATGATGACGTTTACATTGAGGTGGAGATAGAAAGGGGTCAACCAGCGCTTTTGAATCTGTCTTACAGCACAGTTTCTAGTCCTAGTTATGCGCTCGAGAGTAGACATCAAATCGGCAGCTTCAGAAAAAACATCCCACATGATACATTCAACTTCGGAGGTTCTGATGAATTCAGTTTTGAAGTTCACGTTTTTGATATCAAAGGGTTAGTCCAACTTCAGATAACTTTTGCCCAGAGACCGGAGTTCGGGCTTCTGAGATTTTTCGTCACATTTTTCGCCTGTTTCTTCTCGTTGCTGTTTATCGTGGCATTGGCTTGGAAGATCAAAGTTAGATATTCCAGTTATGTCATGGCCAGACATCGCGTCGAAGAGATGAAGCAGATGGCCAGCCGACCTTTCGCCAAGGTCTGTTTAGCTCTGACAAACCCTCACTTGGAAGCACCGAACAGGCAGCAAACACTGCCGTCCGCCATCGTAGTCCAGCCAACGGAAAACCACACTGCTGCTGTGGGGGTTTTTATGATGCGCCTTCCTGGGGATAGAGACGGCTACACTCCTATTGGCCAGACAGGCATCTGCTGTGCAACCGCGCTTGGTACTCGTGGAAAACGCGGTCTCCGCACCCCTCCACCCCCATACACTAACCGCGGGACGACGGTTAAGAGATCCAATTTGGTGACGTCTTGTTGTGCATGA

Transcript

chr3Alt.g5477.t1

AATTCATTATTCTTTTGCCCTTAAGCAAATTAGCCTACCAAGCCTCATTTTCATGTGCCAAATTGAAAAGAATTCTTGCTCTCAGATCAGTGCGAAAAAAATAGCGATTGTAACAAAAATGGTCTTTGCATGAGAGGAATATGTATCTGTAATTCTGGGTGGTGGGGAAACTTCTGTCAGTTTTGTCGTTTGAGATTGTCCGTCGATAATGGTGAAATTAATGATGGACATGGTGCCTATGCTAGGAGTTCCAAATGTTCCTGGCTTATAGAATCTCCCAGGCCGAATAGTACCATTCATTTAGATCTCAAAATGTTTGCTACTGAATGTAACTGGGATCACCTTTATATCTATGATGGCAATTCTGTCAAAAGTCCCTTAATAGCAGTGCTAAGTGGGATCATAAAGGACCCAAAGAGAGGGAATTTTGAGCAAAGTCTCATGCTACGAGCCAATTCTGGCTCAGCGCTCTTGTACTTTTACAGTGACAAGTTCTACAATGAGAAGGGATTCAAAATAAAATACAGCATATCAACAGATTGTTCAGCCAAATGCAGTTTTCATGGTTCTTGTGGCAAGAAAGAGCAGTGCATTTGTGATTCTGGATGGACAGGTGCTCATTGCGACATTCAAACCTGCATTGCTGATTGTGTGAATGGATTTTGCAGCAATGACACAAGATTATGTGTCTGTTATCCTGGTTTTTATGGTGCCTCATGTAATGTTAGTGGTGAAAGAGCATTCTGGACCCAATATTCCTCAAAAGGAGCAGGTCTTATTCAAGAGCGAGCATCTCATGCTGCTGCAGTCATTGGAGACTACATGTGGGTGTTTGGAGGGTTTTCATTAAACCCAGGGCCATTTGAAAACCTTGTTAGGTATCACATTCCCAGTGATAGCTGGGAGGTTGTGCGGCCTTTTGTTAATAGCACTGCAGTTCCTTCTCAGCGCTATGGCCACTCCATGATTGCTTATAATAGTTCTCTTTATATATTTGGGGGCAGAAATGGCCAACTAGCTACCGATGAGCTGTGGTCCTTTGACACTCGTACACTTATTTGGTCTTTGCTTCCAAGGAAAGGTACCCCACTTCCCGTTGCTGGGCACACAGCCACACTTGTTGATTCCACCATGGTTGTTCTGTTTGGATATGGACAGCGACGGAATTATACAGACAAGGTCCAGGAATTTGATCTGGAAACTGGCACATGGAGCATACATGATGTACCCAAGGATATCATCCATCCAACATTTGCACACAGCAGTGCCTACGATCCAGCAACTGGCATAATCTACATCCATGGTGGATTTTTTGATAATGAACCCAGCACATCACTTGCATCTTATGATCCGACCACAAGAACTTGGCGAGCCCTTGCAAACAGCAGTGTGCCACGGTTCCTTCACACAGCTGTGTTTGTGGATGGAATGATGTTGGTGTTCGGTGGAAACTCCCACAATGGCACCACGAGGATGCCGTCTAACCTATCATGTTTCTCCATGGACTTCCTTGCGTATGACACTGCTTGTGATGAGTGGAAAAAGTTATCACTGCCTGAAAGTTTAAAGTCCTCAGGAAGATACGGTCATTCTGCGGTTGCTTTTAACAGAACCATGTTCGTGTTTGGAGGATTTCAAGGTGTTCTTCTTAAAGACGTCCTTTCATTCACATCTGGTCCATGCGCTCTGATGAGAGACAAGAGTAGTTGTGAAATGAGCTCGAATGTTTCTGGTTGTGTGTGGAATGAAAGGACGTCAACCTGCCTTGGACCAGAACGATGTGCGACTCCGCTGACCAAAGAGCGAGAGAAGTGCCGTAAACTCGGACAGAGCTGTACTAGATGTACCTCCAGTGTGCATGGATGTTCCTGGTGTGAAGGGGAGAAACAGTGTGTCTCAGGAAACTGCCCTAATGGAGCGCCAAAGATAGATTCTCTTGCTAAATGTTCAAGGAATTCAAAGTCCTCATCCTGTCAAGGAACTGATTGTGAGAATAAGGGATGCTATAACCTCAGCTCATGCGAAGACTGCACCAAGGGATCGCTTTGCATGTGGTGTGAGTCTGAGAAACAGTGTGTGGCTAAGAATTCGTATCCAATTTCTTTTCCCTATGGACAGTGCCGCGGTTGGATTGAAGAACTACAATGTTCAGATGAGCGCTGTTCCGGAATGAAAACGTGTGATGAATGCCACACCCTCCCCGGGTGCGGATGGTGTGACGATGGGTCAGGCACCGGCTTGGGCGAGTGCATGGAGGGAGGGAATGATGGCCCTTTTAACAACAGCGATGCAAATGCCGTGACTTCCCAGTGTCCAAACGACCTGTGGTTCTTTGTTGAGTGCCCAGATTGTCAATGCAATGGGCACAGTACGTGTATCAACCGGAACATCTGTGAAAAGTGCCAAGGCCAAACAACTGGGCCCCGCTGTGAGGTTTGCTCACCAGGTCATCATGGGGACCCGAAGAATGGAGGAACCTGCCAGGCTTGTGAGTGCAATGGGCATGCCAACTCATGCGATTCTGTGACTGGCCATTGTAACTGTTTGGCTCGCTATGTGACTGGCAAAAACTGTGAACGCTGCGAAAAGGATGAGAATAGCGATGTAATTGTTGGCAACGCAACAAACGGTGGACACTGTTACAATAAACTTACCAGAAATCTGCGATACACCTTCATTGTTTCGAACAAGACGAGTATTTCTTTCCTGTACATTCCCACAGAGGGTGATGATGACGTTTACATTGAGGTGGAGATAGAAAGGGGTCAACCAGCGCTTTTGAATCTGTCTTACAGCACAGTTTCTAGTCCTAGTTATGCGCTCGAGAGTAGACATCAAATCGGCAGCTTCAGAAAAAACATCCCACATGATACATTCAACTTCGGAGGTTCTGATGAATTCAGTTTTGAAGTTCACGTTTTTGATATCAAAGGGTTAGTCCAACTTCAGATAACTTTTGCCCAGAGACCGGAGTTCGGGCTTCTGAGATTTTTCGTCACATTTTTCGCCTGTTTCTTCTCGTTGCTGTTTATCGTGGCATTGGCTTGGAAGATCAAAGTTAGATATTCCAGTTATGTCATGGCCAGACATCGCGTCGAAGAGATGAAGCAGATGGCCAGCCGACCTTTCGCCAAGGTCTGTTTAGCTCTGACAAACCCTCACTTGGAAGCACCGAACAGGCAGCAAACACTGCCGTCCGCCATCGTAGTCCAGCCAACGGAAAACCACACTGCTGCTGTGGGGGTTTTTATGATGCGCCTTCCTGGGGATAGAGACGGCTACACTCCTATTGGCCAGACAGGCATCTGCTGTGCAACCGCGCTTGGTACTCGTGGAAAACGCGGTCTCCGCACCCCTCCACCCCCATACACTAACCGCGGGACGACGGTTAAGAGATCCAATTTGGTGACGTCTTGTTGTGCATGAACGAATGTAATGTGTTAAAGACAAATGGTGCGATAGCATATGAGGACATTTCGACTCCCCGAGAGTTGTGAATCTGAATAAGTGTTAAAATAACAGAAGTGAAAAAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6A051	Attractin-like protein 1 OS=Mus musculus OX=10090 GN=Atrnl1 PE=1 SV=2
Q5VV63	Attractin-like protein 1 OS=Homo sapiens OX=9606 GN=ATRNL1 PE=1 SV=2
Q19981	Putative protein tag-53 OS=Caenorhabditis elegans OX=6239 GN=tag-53 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF13854 all species →	Kelch_5	Kelch motif	Repeat	Interproscan
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR051568 all species →	Family	LZTR1/Attractin	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46376 all species →	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24332	ATRN; attractin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.