Gene detail

Detailed information of g551.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3022087.1, unnamed protein product [Porites evermanni]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BZW8	NHL repeat-containing protein 2 OS=Mus musculus OX=10090 GN=Nhlrc2 PE=1 SV=1
A4IF69	NHL repeat-containing protein 2 OS=Bos taurus OX=9913 GN=NHLRC2 PE=2 SV=1
Q8NBF2	NHL repeat-containing protein 2 OS=Homo sapiens OX=9606 GN=NHLRC2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)
Orthogroup (gene family)	OG0000092 (this species only)
Orthogroup (gene family)	OG0001809 (this species only)
Orthogroup (gene family)	OG0002085 (this species only)
Orthogroup (gene family)	OG0002365 (this species only)
Orthogroup (gene family)	OG0003160 (this species only)
Orthogroup (gene family)	OG0006333 (this species only)
Orthogroup (gene family)	OG0006921 (this species only)
Orthogroup (gene family)	OG0007348 (this species only)
Orthogroup (gene family)	OG0009177 (this species only)
Orthogroup (gene family)	OG0012530 (this species only)
Orthogroup (gene family)	OG0019774 (this species only)
Orthogroup (gene family)	OG0027670 (this species only)
Orthogroup (gene family)	OG0041221 (this species only)
Orthogroup (gene family)	OG0059807 (this species only)
Transcription factor family	THAP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05485 all species →	THAP	THAP domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF05291 all species →	Bystin	Bystin	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF04434 all species →	SWIM	SWIM zinc finger	Domain	Interproscan
PF05811 all species →	DUF842	Eukaryotic protein of unknown function (DUF842)	Family	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan
PF01125 all species →	BUD31	Pre-mRNA-splicing factor BUD31	Domain	Interproscan
PF13905 all species →	Thioredoxin_8	Thioredoxin-like	Domain	Interproscan
PF05025 all species →	RbsD_FucU	RbsD / FucU transport protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006612 all species →	Domain	THAP-type zinc finger	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR007955 all species →	Family	Bystin	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR033162 all species →	Family	Tubulin-folding cofactor D	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR008560 all species →	Family	Protein of unknown function DUF842, eukaryotic	Interproscan
IPR050517 all species →	Family	DNA Damage Response and Repair Kinase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR001748 all species →	Family	Pre-mRNA-splicing factor BUD31	Interproscan
IPR045302 all species →	Domain	NHL2, NHL repeat domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR012336 all species →	Domain	Thioredoxin-like fold	Interproscan
IPR017943 all species →	Homologous_superfamily	Bactericidal permeability-increasing protein, alpha/beta domain superfamily	Interproscan
IPR007721 all species →	Family	D-ribose pyranase RbsD/L-fucose mutarotase FucU	Interproscan
IPR023750 all species →	Homologous_superfamily	RbsD-like superfamily	Interproscan
IPR050443 all species →	Family	RbsD/FucU L-fucose mutarotase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46559 all species →	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11	Interproscan
PTHR12821 all species →	BYSTIN	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR12658 all species →	BETA-TUBULIN COFACTOR D	Interproscan
PTHR35385 all species →	PROTEIN B, PUTATIVE-RELATED-RELATED	Interproscan
PTHR21096 all species →	UNCHARACTERIZED	Interproscan
PTHR11139 all species →	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan
PTHR46388 all species →	NHL REPEAT-CONTAINING PROTEIN 2	Interproscan
PTHR31690 all species →	FUCOSE MUTAROTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004726 all species →	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0030971 all species →	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0070374 all species →	Biological Process	positive regulation of ERK1 and ERK2 cascade	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0030515 all species →	Molecular Function	snoRNA binding	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0007021 all species →	Biological Process	tubulin complex assembly	Interproscan
GO:0007023 all species →	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0016328 all species →	Cellular Component	lateral plasma membrane	Interproscan
GO:0034333 all species →	Biological Process	adherens junction assembly	Interproscan
GO:0048487 all species →	Molecular Function	beta-tubulin binding	Interproscan
GO:0070830 all species →	Biological Process	bicellular tight junction assembly	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000077 all species →	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005996 all species →	Biological Process	monosaccharide metabolic process	Interproscan
GO:0016853 all species →	Molecular Function	isomerase activity	Interproscan
GO:0048029 all species →	Molecular Function	monosaccharide binding	Interproscan
GO:0006004 all species →	Biological Process	fucose metabolic process	Interproscan
GO:0016857 all species →	Molecular Function	racemase and epimerase activity, acting on carbohydrates and derivatives	Interproscan
GO:0036065 all species →	Biological Process	fucosylation	Interproscan
GO:0042806 all species →	Molecular Function	fucose binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20366	ERGIC2, ERV41; endoplasmic reticulum-Golgi intermediate compartment protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.