Gene detail

Detailed information of g5517.t1 in Acropora digitifera

Genomic Location: chr3Alt:4320589...4342402
NR annotation: XP_044169352.1, uncharacterized protein LOC114955787 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5517.t1

ATGCTTCAGCAACAAACATTCCTTTTCACTTTCATTTGCATTGTTGCATTCGTCCATGGCGCGAAAGCTCAGATGAACGCCACATTGGGATTCACTTTAAGATTCACTTTTCCGCCAAACTGCATTGATTCGAAAGGGAACATGCGTAAAATTGGTGAAACATGGAAAGAAGGGATTTTCTCAACGTGTTCTTGTACAGGCCCAATGCAACTGCAGTGTTTCTCAGTAGTTCTTCCTCCACCGGTCATTTTCTCCTGCAAGGATAAGCAGAGAAACACAAGGGAACCAGGCGATGTTTGGTTGGAGGATCCAAAAACGAATTGCACTTGTACTTCAAACAACTTTAGGGCATGTGAGCGATTATCCGAGCCCGTGTGCCTGGATGTTAGTGGACAATTTCGAAAGAATTTCGAGACCTGGTTGAACGGTTCCTGTGTGGAATGCGCATGCGTGAATGGTAGTATAAACTGCACTGTATATGATGTCATTATTACGCCAGGGTTGTACAAAGTTGACGAGTCTCCAACATGTCAGCTGTGTGACATTCGACTGCAGACGGCTTTATCCTCGAATGCCTGCATAGCCTTCCGTCATCAAAGAGCAAAACTGACCGAATGCGCGTCTGGGGGATTTTACATCCAGGACACTCACTTGTGCAATGGCATAGAAGAATGCCCGGATGGATCAGATGAGAAAAATTGTGAAAACGTCGTTTGTAAGGACGAGGAAGGGAAAGTCCTGGTCATGAAAGGCACGAAGGATTGGATAGTGTCCAGATGCCTCAGTTGTTTCTGCATCAAGGGCTTGGTGACTTGCAAAAAAACAATGACAGTCAATTTTCCCGCCTTTTTCCGTGCCGCCTATCAGTATGAAGACACTTGCAAACAGCCAACGTGCAAGATTCTCGATTTCGTGCGGAACAATAAAAAATGGTGTGAAGGCGCTGAATTGATAAAAGATCGAGGGATCATTTATGAAGGACAGACTTGGAAAGCCGGTGGTTGCGATTTTTACTTTAATGGGTCTCTCAACCACCAAGAGTGTCCAATGATGAGTAGGCCAGTATGCTATATCTTCAATGGATTTGTCTGCTGCGCTTCGCAATGCCCAGCTCTTCAACAGATTACGGGTCAAATGAGAGGAAATCTTTCTTTCTGTGCAAATGGCCGTCAAGTAGCATCAAAGAACTCAGATTGCAAGGATACTAGTAATTGTCTACAAAATATCAACATCCAGAATTGTTCTTCAGAAGTCACATGTCAAGACGAAGACGGTAACCAGTACTTTGAAGGAGCCAGGTGGTCTGTTGGTTCCTGCATGCAGTGCGCATGCACAAGTGGCATCATACAGTGTTCAAGGAAAGTATCGCTCGTCAAGTTTCTGGAGCTAACTCCACTGAAGAATCAACCGATTGGCGCTGTTACCTTCACTGAATCGTGTAATCAGTCGGAATGCAATGTGGCGAAATATATGGCGAAAAATGCAGGAGTTTGTCACACTTGCAGATGGAACGATAAACTCTATTATGAAGGCGATCACTGGAAAGAAAATGGCGTCGATTTTTTCTGCACAAAGAGTTCCCATGAAAGCCATCGAGTAAGACCTGGTTGCTACGTGGAAAGCAGACGAGTCAAGTGTACAGGTGCAATAGTAGGAATAAGACAACTGTCCCTCATATCGAACCATCAACTGTTCCTGTGTGATAGTGGAGATGAGATCAGACCAATCAGTGACAGATGCAACATTCGAGCTGACTGCGACGATTTCTCAGACGAAAGGAACTGTGAAAACTATTATTGTTCATATGAGACGGCGCATGGATTTTTGTGGAACAGGACACAGTTGGGTCAACAAGTTCTAAAGGAATGCTCATTAGTTAACCCCACTTGGACAGGAATATTTGGTAGCAAATGCGGCCAAAATGCCGCTCGAACAGTCTGGGATCACAAGCACATTTGCAACTGCGAAAACAGAACCTTGTTGGAATACTTCAAAGAAAATAATGCTAAAGTGAACTCCACCAACTTTTTCAATGTCTCAGAAGACCTGGCCATTTCAGGAAAAGCCAAGGAATTCTCTAATCCCAGAATTTTCCTGAATTTGAACGAAGAGTTGTTTGTCAACATAACAAGTCGCTTTCTCACGCCATTAACTCTGGATAATGCTAATCTGGCACTGCAATATTGTTTGAGCTTTATTGACACAATGCTTACGTCTCCACAATACAGCGTTAAAAATCCATTTTGTAAAGCGGAATTGGCTGCGGAACGGAATTCCTTGATCTACAAGGCTCTGGGATTTCTGCGCCAAGCTCCCAACCAAACAGAAGCACATAGAGTTGGATGGAGGCTCCAGATATGGCCAGTTGAAGACGTAAAGACTTCGCCGCAAGTCGTCGATAACTTTCAAGAAAAGCCGACGTTTGGCTTAGCGAGACGACTCCTTTTTCTGCAGTTGAATACGGCGCCGCTCGTCTCGCCCATTGTTGAGCAGAAAACAACTCCAGGGGACACCGTACGGGAGAAAAACGTGACCAGCAAAAATAACACGAACCAGAACACGACCAGGACAACAAACAACGACTCGACAAGAGTTCCTACAATTATACAGTTGAACGATTTGTTGAGAGCAAATAACTGCACAGAGCTGACGTATGAAGAGGAAAAGGATGTTTTCATATTTAAGAGAGACGTTTCAGCTGAAGAATTAAAGCACGAACAAGTCCAGAGCGACATGGAGATAGTTTTACTTTGCATTTCAATAGCTGCCATTATTCTTGCCCTTGTACTTCTGACGATGATGAGGTTGAAAAACTCTGAGCGGTTGTTCATACACAAAAGTCTGCTTTTCTCACTGGGAGTTGGTAATCTCGTGTTTGTTCTGGATAAAACTCTGTTTGCTTCGAGAGAGGATCACCCGGCTTTTTGCTCTGCTGTAGCAGTGGTCCAACATTACCTACACACAGCAGTATTCACCTGGATGCTCGTGGAAGGCATCAATCTCTACATCAAACTGGTTAAAGTGTTCTCAGTTAGAAAACTGTATGCAATGTACTTGGCGATTGGATGGGGAGTCCCAGCAGTCGTTGTGGGACTCGTGGCTTCAATTCGCCCCAGTACCTTTGACATGGCTGAATCTGAAACAACTGAAATCACATGCGGAGCACTCAACCTGACAGCCACTAAACAGCGAACAAGATGCTGGATGAACGGAAACCTCTGGATTTACAAGGGACCTATACTGGCCATTCTAATGGTAAATTTTGCGTTGTTCACAATTCTTCTTCGCGTAATCTTTGGAAAAATATCCTCCAAATATGGCAACAATCACGTTATTCTTGCAAGAAAAGGTCTAAGAAGTATCATTGCTCTTCTACCCTTGCTTGGGGTCACGTGGTTATTGGGCTTTTTCATCGAGTTTCACTACATCCTGACCTACCTCTTTATTTTGCTAAATTCTACACAGGGTGTTGTATTTTTCATTTTCCATTGTATCCTGGACGACCAGGTTCAAGATGCTATGCGAAAGTTTCTGGTGAAGCACGGACAAACAAATAACATTAGACAGACATTTGACACACCAGCTTCAAACCCTAATACCGCGACACCAGACTTAGAAAGGAACCCCAAAATACGAACCCTACAACAAACTGTGGATGACAGTGCGACAAACAGTAGGTTGATGCAAAATAAAAGAGAGGATGGACAAGAAAATGATACGTGTTTATAA

Transcript

chr3Alt.g5517.t1

ATATGAAGTTATTTTTTCAAAATTATCCGGCGCAGCGTGGAACGGTCATTAAAATTTGTTTCTGTAAACATTGCTGCCAATACGTTTATCGGGACAGGAAATTTCCGTTGACAGTCGACCCCTTTCACTCCTTAAGTTTCTTTCTTTTAAAGCAGATTGATCAGTAAACTTTGAAAGTGATGCTTCAGCAACAAACATTCCTTTTCACTTTCATTTGCATTGTTGCATTCGTCCATGGCGCGAAAGCTCAGATGAACGCCACATTGGGATTCACTTTAAGATTCACTTTTCCGCCAAACTGCATTGATTCGAAAGGGAACATGCGTAAAATTGGTGAAACATGGAAAGAAGGGATTTTCTCAACGTGTTCTTGTACAGGCCCAATGCAACTGCAGTGTTTCTCAGTAGTTCTTCCTCCACCGGTCATTTTCTCCTGCAAGGATAAGCAGAGAAACACAAGGGAACCAGGCGATGTTTGGTTGGAGGATCCAAAAACGAATTGCACTTGTACTTCAAACAACTTTAGGGCATGTGAGCGATTATCCGAGCCCGTGTGCCTGGATGTTAGTGGACAATTTCGAAAGAATTTCGAGACCTGGTTGAACGGTTCCTGTGTGGAATGCGCATGCGTGAATGGTAGTATAAACTGCACTGTATATGATGTCATTATTACGCCAGGGTTGTACAAAGTTGACGAGTCTCCAACATGTCAGCTGTGTGACATTCGACTGCAGACGGCTTTATCCTCGAATGCCTGCATAGCCTTCCGTCATCAAAGAGCAAAACTGACCGAATGCGCGTCTGGGGGATTTTACATCCAGGACACTCACTTGTGCAATGGCATAGAAGAATGCCCGGATGGATCAGATGAGAAAAATTGTGAAAACGTCGTTTGTAAGGACGAGGAAGGGAAAGTCCTGGTCATGAAAGGCACGAAGGATTGGATAGTGTCCAGATGCCTCAGTTGTTTCTGCATCAAGGGCTTGGTGACTTGCAAAAAAACAATGACAGTCAATTTTCCCGCCTTTTTCCGTGCCGCCTATCAGTATGAAGACACTTGCAAACAGCCAACGTGCAAGATTCTCGATTTCGTGCGGAACAATAAAAAATGGTGTGAAGGCGCTGAATTGATAAAAGATCGAGGGATCATTTATGAAGGACAGACTTGGAAAGCCGGTGGTTGCGATTTTTACTTTAATGGGTCTCTCAACCACCAAGAGTGTCCAATGATGAGTAGGCCAGTATGCTATATCTTCAATGGATTTGTCTGCTGCGCTTCGCAATGCCCAGCTCTTCAACAGATTACGGGTCAAATGAGAGGAAATCTTTCTTTCTGTGCAAATGGCCGTCAAGTAGCATCAAAGAACTCAGATTGCAAGGATACTAGTAATTGTCTACAAAATATCAACATCCAGAATTGTTCTTCAGAAGTCACATGTCAAGACGAAGACGGTAACCAGTACTTTGAAGGAGCCAGGTGGTCTGTTGGTTCCTGCATGCAGTGCGCATGCACAAGTGGCATCATACAGTGTTCAAGGAAAGTATCGCTCGTCAAGTTTCTGGAGCTAACTCCACTGAAGAATCAACCGATTGGCGCTGTTACCTTCACTGAATCGTGTAATCAGTCGGAATGCAATGTGGCGAAATATATGGCGAAAAATGCAGGAGTTTGTCACACTTGCAGATGGAACGATAAACTCTATTATGAAGGCGATCACTGGAAAGAAAATGGCGTCGATTTTTTCTGCACAAAGAGTTCCCATGAAAGCCATCGAGTAAGACCTGGTTGCTACGTGGAAAGCAGACGAGTCAAGTGTACAGGTGCAATAGTAGGAATAAGACAACTGTCCCTCATATCGAACCATCAACTGTTCCTGTGTGATAGTGGAGATGAGATCAGACCAATCAGTGACAGATGCAACATTCGAGCTGACTGCGACGATTTCTCAGACGAAAGGAACTGTGAAAACTATTATTGTTCATATGAGACGGCGCATGGATTTTTGTGGAACAGGACACAGTTGGGTCAACAAGTTCTAAAGGAATGCTCATTAGTTAACCCCACTTGGACAGGAATATTTGGTAGCAAATGCGGCCAAAATGCCGCTCGAACAGTCTGGGATCACAAGCACATTTGCAACTGCGAAAACAGAACCTTGTTGGAATACTTCAAAGAAAATAATGCTAAAGTGAACTCCACCAACTTTTTCAATGTCTCAGAAGACCTGGCCATTTCAGGAAAAGCCAAGGAATTCTCTAATCCCAGAATTTTCCTGAATTTGAACGAAGAGTTGTTTGTCAACATAACAAGTCGCTTTCTCACGCCATTAACTCTGGATAATGCTAATCTGGCACTGCAATATTGTTTGAGCTTTATTGACACAATGCTTACGTCTCCACAATACAGCGTTAAAAATCCATTTTGTAAAGCGGAATTGGCTGCGGAACGGAATTCCTTGATCTACAAGGCTCTGGGATTTCTGCGCCAAGCTCCCAACCAAACAGAAGCACATAGAGTTGGATGGAGGCTCCAGATATGGCCAGTTGAAGACGTAAAGACTTCGCCGCAAGTCGTCGATAACTTTCAAGAAAAGCCGACGTTTGGCTTAGCGAGACGACTCCTTTTTCTGCAGTTGAATACGGCGCCGCTCGTCTCGCCCATTGTTGAGCAGAAAACAACTCCAGGGGACACCGTACGGGAGAAAAACGTGACCAGCAAAAATAACACGAACCAGAACACGACCAGGACAACAAACAACGACTCGACAAGAGTTCCTACAATTATACAGTTGAACGATTTGTTGAGAGCAAATAACTGCACAGAGCTGACGTATGAAGAGGAAAAGGATGTTTTCATATTTAAGAGAGACGTTTCAGCTGAAGAATTAAAGCACGAACAAGTCCAGAGCGACATGGAGATAGTTTTACTTTGCATTTCAATAGCTGCCATTATTCTTGCCCTTGTACTTCTGACGATGATGAGGTTGAAAAACTCTGAGCGGTTGTTCATACACAAAAGTCTGCTTTTCTCACTGGGAGTTGGTAATCTCGTGTTTGTTCTGGATAAAACTCTGTTTGCTTCGAGAGAGGATCACCCGGCTTTTTGCTCTGCTGTAGCAGTGGTCCAACATTACCTACACACAGCAGTATTCACCTGGATGCTCGTGGAAGGCATCAATCTCTACATCAAACTGGTTAAAGTGTTCTCAGTTAGAAAACTGTATGCAATGTACTTGGCGATTGGATGGGGAGTCCCAGCAGTCGTTGTGGGACTCGTGGCTTCAATTCGCCCCAGTACCTTTGACATGGCTGAATCTGAAACAACTGAAATCACATGCGGAGCACTCAACCTGACAGCCACTAAACAGCGAACAAGATGCTGGATGAACGGAAACCTCTGGATTTACAAGGGACCTATACTGGCCATTCTAATGGTAAATTTTGCGTTGTTCACAATTCTTCTTCGCGTAATCTTTGGAAAAATATCCTCCAAATATGGCAACAATCACGTTATTCTTGCAAGAAAAGGTCTAAGAAGTATCATTGCTCTTCTACCCTTGCTTGGGGTCACGTGGTTATTGGGCTTTTTCATCGAGTTTCACTACATCCTGACCTACCTCTTTATTTTGCTAAATTCTACACAGGGTGTTGTATTTTTCATTTTCCATTGTATCCTGGACGACCAGGTTCAAGATGCTATGCGAAAGTTTCTGGTGAAGCACGGACAAACAAATAACATTAGACAGACATTTGACACACCAGCTTCAAACCCTAATACCGCGACACCAGACTTAGAAAGGAACCCCAAAATACGAACCCTACAACAAACTGTGGATGACAGTGCGACAAACAGTAGGTTGATGCAAAATAAAAGAGAGGATGGACAAGAAAATGATACGTGTTTATAAGAAGGATGCATAATGCATAAAGCTTTTGTAAGCTCTTTTCCCAAGAGCTTTAGCAGCAACGACGGCAACGCATAGGAAAAGGTCGCTTGAAAATAAATTTTGCACAATTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NYQ6	Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens OX=9606 GN=CELSR1 PE=1 SV=1
Q9HAR2	Adhesion G protein-coupled receptor L3 OS=Homo sapiens OX=9606 GN=ADGRL3 PE=1 SV=2
Q80TS3	Adhesion G protein-coupled receptor L3 OS=Mus musculus OX=10090 GN=Adgrl3 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12011 all species →	ADHESION G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04591	ADGRE1, EMR1; adhesion G protein-coupled receptor E1	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.