Gene detail

Detailed information of g5525.t1 in Montipora capitata

Genomic Location: Sc0000110:438161...441559
NR annotation: XP_029184355.2, dermatan-sulfate epimerase-like protein [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5525.t1

atgctgtcgttaattcgagtgttctttctcgtattttgtctgatcgtatatgtcagatccaaagagaatcgtaaacatccattcttattttttaatgaggaagacattccagttcttcaacagcgcgcgagaacgacgcacgtcgaaattgcgaacaggatacgggatgcgactcaagaaatgaaacaaaaccctgagaaatatcttccaccaacagaatgggagaagttctccagtgcttggaatgaacgtttcggaaacgacctttgtgctatagctttctattgtgttataaacccggaggatatccaggcgagagatctcgccattttgtttatggatcggcttgaaaatctaccaaactggcgggtcaactcatctttgcacgacgacgtgcccgttgcgcactctttagttggcatgactacagcgtacgattatttgtatctacatttgaacagccatcgaagaactctattcttggctaagatcacggctgtaacaaaagaactgtacgaacgatcttctgatagacatctgtggtgggggacttcctaccttcaaaaccacgttgcgacaaactatgttgctattttgactggtgcgttagtcgttgcgaagcaccaatcgatcgaagctgagaagtggatagcacgagctcatcttatgctcagccgaaacctggaactgtggagcattgttgtagatggttcaatcaatgaaggcgttgcttacggtacgtacacctcccgctccgtaacgcagtacgtattccttgcgttacggcactttcgtgttgatttcacgcgcaatccgtggctgaaagaacatttttggttcatgtactatacgatcctttctgggttcaaggagactgtaggaattggcgactcaaatcggaactggttttatggtccagaaagccaacttgtttttctagatagttatgtaatgaggaatggtttaggaaactggcttgcaaaacagatcagggaacatcgacttttgaaatcacattatacccagacgttatctcacgcaaattgcatgcttcacacagaattccttttctacaatgcgagcatcaaagaaagagctcagccgaatcccactttgccccgccttcgggttttcagtgactggggtgttgttacttatggaggtggagtagttataccacgaagaaataactcgcgatacccttcctccggggaacggacatttctctccttcaagtgcagtgtccttcatggaagagcaatcaacactgtggtaagagggaaacggtttcgtccatggataagaggctggagaaattttaacccaggacacgaacagccggaccaaggttctttcgtgtttgccccaaatggtgtcccgttcataacagaaacgttatacgcgaacaaatacacgtggctgaacaacgccttactgtttggaccatcgctcaactcagagtgcttcagtcccttcgaggggcagattggagaatgctatcgttggtttgaattcaagaaaatgtctacctggagtgcagatggagatatcataaccgcgtcaaataatgaccacatggtttttgtcagcggagaaatgagtcaatggtatcgaacagagcttggacttctgagcgtgtatcggaacctccttatgctaactccaaccgttcttttagttgttgatcacattgaaagaacggaaaactgtaaaacgtcaattatgagtgcttttttccacaacgttaatcaaccttttatgctaaacataagtcgttccggagatacatacgccaccatgtccatagatggactcttgcacgaggtttactggttcgatttagagactggaatgaacagcttagttaaagtaggtcaatatggcacagggtacaaatcgacagtgaccaattacattaatataaccactcacctgggttctcgcgtcactagaaccgcttaccttttcttggggcctggaaacagagttgatagcccacgattactcgcttcccatgagtatggattgaagctgttgctaaagatcaatgacgtcaaatatattgtttccatagcaacaaagcacagttcaccttacaccagatatctctttttgggcttcggcggattctgcaaagttcgaataaacgacagtaaaaccgtacgctttggagtcgacactgttcttgccgctgcctcagttgcgtcgaattcagcatcaagtggcacagacttgtccatcatctggaggcttctcgcctcgctttctcttgtcttctgcgtttcctgcagtctacttttattctgtttaaagctgcagggcaaaatccttggtttaacgactttaaaagttgttttaagcagtctcatgctcctttgggtagttttaaccttcaaggtaaattttgatttgtgtacgggaaaaaattgcttgaggaccctaccccaaggacctctcaacagaaacggagaaaatgattttgaaccgaaagaggacccaccgtttgttttatacacttcgcttccacttgccggaaatgaaattctgcattacattttcaagaatgcctctgatttttttggagttgtgcttcccgcggattcaccacgtaaatttctggatccttgcacaatttacacgaggttccttcctcctgacgaactgtcacacgcaagaactatgttaagagccctagctaaatatcctgtaggatttctgaaaaacgttcccaaaatttccctcaaagctctaccatcagtacgacttggggatcctgggtggagcatgaaactctcttggatacggaaagtactggggtcaaggatgcgcgccattgttgtcataagagaccccaggggatgggtgaactcgtacatgcgtgagatccacgcggataaaagagttcgtgatgccgtacacggagtcatcgatgcaattgcaaatgtcaattgtccgaagaaaaacctctcttactttgctctggaatttcaagaaatccatcggatttcgtttgatttcgtaaatgatatgaaaggagacattcttaaatttttgtctcatctgtgggccacgcatctaagtgctatgtatcgcgcaaacagccacctccctcccgaatctatacattatgtaaaattcgaagatctgatcaacaagcctcgaaaaactatgcagcggttgtttcaatttattggtgttcctttttcaccactgttagagcatcgcattttgactgctgttagaactggtcggttcactttgagtgcatcccgaaccgaggtgttggatgccacaactgcgacagcctgggagagggaacttagcagggaagatgcgcaaaggatcatagacatctgcgcacctgttatgcaaagatttcgttatgacgctgacgaatga

Transcript

g5525.t1

ATGCTGTCGTTAATTCGAGTGTTCTTTCTCGTATTTTGTCTGATCGTATATGTCAGATCCAAAGAGAATCGTAAACATCCattcttattttttaatgaGGAAGACATTCCAGTTCTTCAACAGCGCGCGAGAACGACGCACGTCGAAATTGCGAACAGGATACGGGATGCGACtcaagaaatgaaacaaaacccTGAGAAATATCTTCCACCAACAGAATGGGAGAAGTTCTCCAGTGCTTGGAATGAACGTTTCGGAAACGACCTTTGTGCTATAGCTTTCTATTGTGTTATAAACCCGGAGGATATCCAGGCGAGAGATCTCGCCATTTTGTTTATGGATCGGCTTGAAAATCTACCAAACTGGCGGGTCAACTCATCTTTGCACGACGACGTGCCCGTTGCGCACTCTTTAGTTGGCATGACTACAGCGTACGATTATTTGTATCTACATTTGAACAGCCATCGAAGAACTCTATTCTTGGCTAAGATCACGGCTGTAACAAAAGAACTGTACGAACGATCTTCTGATAGACATCTGTGGTGGGGGACTTCCTACCTTCAAAACCACGTTGCGACAAACTATGTTGCTATTTTGACTGGTGCGTTAGTCGTTGCGAAGCACCAATCGATCGAAGCTGAGAAGTGGATAGCACGAGCTCATCTTATGCTCAGCCGAAACCTGGAACTGTGGAGCATTGTTGTAGATGGTTCAATCAATGAAGGCGTTGCTTACGGTACGTACACCTCCCGCTCCGTAACGCAGTACGTATTCCTTGCGTTACGGCACTTTCGTGTTGATTTCACGCGCAATCCGTGGCTGAAAGAACATTTTTGGTTCATGTACTATACGATCCTTTCTGGGTTCAAGGAGACTGTAGGAATTGGCGACTCAAATCGGAACTGGTTTTATGGTCCAGAAAGCCAACTTGTTTTTCTAGATAGTTATGTAATGAGGAATGGTTTAGGAAACTGGCTTGCAAAACAGATCAGGGAACATCGACTTTTGAAATCACATTATACCCAGACGTTATCTCACGCAAATTGCATGCTTCACACAGAATTCCTTTTCTACAATGCGAGCATCAAAGAAAGAGCTCAGCCGAATCCCACTTTGCCCCGCCTTCGGGTTTTCAGTGACTGGGGTGTTGTTACTTATGGAGGTGGAGTAGTTATACCACGAAGAAATAACTCGCGATACCCTTCCTCCGGGGAACGGACATTTCTCTCCTTCAAGTGCAGTGTCCTTCATGGAAGAGCAATCAACACTGTGGTAAGAGGGAAACGGTTTCGTCCATGGATAAGAGGCTGGAGAAATTTTAACCCAGGACACGAACAGCCGGACCAAGGTTCTTTCGTGTTTGCCCCAAATGGTGTCCCGTTCATAACAGAAACGTTATACGCGAACAAATACACGTGGCTGAACAACGCCTTACTGTTTGGACCATCGCTCAACTCAGAGTGCTTCAGTCCCTTCGAGGGGCAGATTGGAGAATGCTATCGTTGGTTTGAATTCAAGAAAATGTCTACCTGGAGTGCAGATGGAGATATCATAACCGCGTCAAATAATGACCACATGGTTTTTGTCAGCGGAGAAATGAGTCAATGGTATCGAACAGAGCTTGGACTTCTGAGCGTGTATCGGAACCTCCTTATGCTAACTCCAACCGTTCTTTTAGTTGTTGATCACATTGAAAGAACGGAAAACTGTAAAACGTCAATTATGAGTGCTTTTTTCCACAACGTTAATCAACCTTTTATGCTAAACATAAGTCGTTCCGGAGATACATACGCCACCATGTCCATAGATGGACTCTTGCACGAGGTTTACTGGTTCGATTTAGAGACTGGAATGAACAGCTTAGTTAAAGTAGGTCAATATGGCACAGGGTACAAATCGACAGTGACCAATTACATTAATATAACCACTCACCTGGGTTCTCGCGTCACTAGAACCGCTTACCTTTTCTTGGGGCCTGGAAACAGAGTTGATAGCCCACGATTACTCGCTTCCCATGAGTATGGATTGAAGCTGTTGCTAAAGATCAATGACGTCAAATAtattgtttccatagcaacaaaGCACAGTTCACCTTACACCAGATATCTCTTTTTGGGCTTCGGCGGATTCTGCAAAGTTCGAATAAACGACAGTAAAACCGTACGCTTTGGAGTCGACACTGTTCTTGCCGCTGCCTCAGTTGCGTCGAATTCAGCATCAAGTGGCACAGACTTGTCCATCATCTGGAGGCTTCTCGCCTCGCTTTCTCTTGTCTTCTGCGTTTCCTGCAGTCTACTTTTATTCTGTTTAAAGCTGCAGGGCAAAATCCTTGGTTTAACGACTTTAAAAGTTGTTTTAAGCAGTCTCATGCTCCTTTGGGTAGTTTTAACCTTCAAGGTAAATTTTGATTTGTGTACGGGAAAAAATTGCTTGAGGACCCTACCCCAAGGACCTCTCAACAGAAACGGAGAAAATGATTTTGAACCGAAAGAGGACCCACCGTTTGTTTTATACACTTCGCTTCCACTTGCCGGAAATGAAATTCTGCATTACATTTTCAAGAATGCCTCTGATTTTTTTGGAGTTGTGCTTCCCGCGGATTCACCACGTAAATTTCTGGATCCTTGCACAATTTACACGAGGTTCCTTCCTCCTGACGAACTGTCACACGCAAGAACTATGTTAAGAGCCCTAGCTAAATATCCTGTAGGATTTCTGAAAAACGTTCCCAAAATTTCCCTCAAAGCTCTACCATCAGTACGACTTGGGGATCCTGGGTGGAGCATGAAACTCTCTTGGATACGGAAAGTACTGGGGTCAAGGATGCGCGCCATTGTTGTCATAAGAGACCCCAGGGGATGGGTGAACTCGTACATGCGTGAGATCCACGCGGATAAAAGAGTTCGTGATGCCGTACACGGAGTCATCGATGCAATTGCAAATGTCAATTGtccgaagaaaaacctctcttaCTTTGCTCTGGAATTTCAAGAAATCCATCGGATTTCGTTTGATTTCGTAAATGATATGAAAGGAGACATTCTTAAATTTTTGTCTCATCTGTGGGCCACGCATCTAAGTGCTATGTATCGCGCAAACAGCCACCTCCCTCCCGAATCTATACATTATGTAAAATTCGAAGATCTGATCAACAAGCCTCGAAAAACTATGCAGCGGTTGTTTCAATTTATTGGTGTTCCTTTTTCACCACTGTTAGAGCATCGCATTTTGACTGCTGTTAGAACTGGTCGGTTCACTTTGAGTGCATCCCGAACCGAGGTGTTGGATGCCACAACTGCGACAGCCTGGGAGAGGGAACTTAGCAGGGAAGATGCGCAAAGGATCATAGACATCTGCGCACCTGTTATGCAAAGATTTCGTTATGACGCTGACGAATGa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IZU8	Dermatan-sulfate epimerase-like protein OS=Homo sapiens OX=9606 GN=DSEL PE=1 SV=2
Q0VBN2	Dermatan-sulfate epimerase-like protein OS=Mus musculus OX=10090 GN=Dsel PE=2 SV=1
Q8BLI4	Dermatan-sulfate epimerase OS=Mus musculus OX=10090 GN=Dse PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002542 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16332 all species →	DUF4962	Domain of unknown function (DUF4962)	Repeat	Interproscan
PF00685 all species →	Sulfotransfer_1	Sulfotransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032518 all species →	Domain	Heparinase II, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000863 all species →	Domain	Sulfotransferase domain	Interproscan
IPR052447 all species →	Family	Dermatan-Sulfate Isomerase	Interproscan
IPR008929 all species →	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15532 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0030204 all species →	Biological Process	chondroitin sulfate metabolic process	Interproscan
GO:0030205 all species →	Biological Process	dermatan sulfate metabolic process	Interproscan
GO:0047757 all species →	Molecular Function	chondroitin-glucuronate 5-epimerase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01794	DSE; chondroitin-glucuronate 5-epimerase	EC:5.1.3.19	Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate	ko00532	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.