Gene detail

Detailed information of g553.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_025424508.1, 6-pyruvoyl tetrahydrobiopterin synthase [Sipha flava]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90W95	6-pyruvoyl tetrahydrobiopterin synthase OS=Poecilia reticulata OX=8081 GN=pts PE=2 SV=1
Q03393	6-pyruvoyl tetrahydrobiopterin synthase OS=Homo sapiens OX=9606 GN=PTS PE=1 SV=1
Q5REZ5	6-pyruvoyl tetrahydrobiopterin synthase OS=Pongo abelii OX=9601 GN=PTS PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0000063 (this species only)
Orthogroup (gene family)	OG0000360 (this species only)
Orthogroup (gene family)	OG0001107 (this species only)
Orthogroup (gene family)	OG0001407 (this species only)
Orthogroup (gene family)	OG0002742 (this species only)
Orthogroup (gene family)	OG0003095 (this species only)
Orthogroup (gene family)	OG0004218 (this species only)
Orthogroup (gene family)	OG0004543 (this species only)
Orthogroup (gene family)	OG0007964 (this species only)
Orthogroup (gene family)	OG0009565 (this species only)
Orthogroup (gene family)	OG0010823 (this species only)
Orthogroup (gene family)	OG0018251 (this species only)
Orthogroup (gene family)	OG0019888 (this species only)
Orthogroup (gene family)	OG0171463 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00560 all species →	LRR_1	Leucine Rich Repeat	Repeat	Interproscan
PF00561 all species →	Abhydrolase_1	alpha/beta hydrolase fold	Domain	Interproscan
PF01965 all species →	DJ-1_PfpI	DJ-1/PfpI family	Domain	Interproscan
PF13469 all species →	Sulfotransfer_3	Sulfotransferase family	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF07727 all species →	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF01242 all species →	PTPS	6-pyruvoyl tetrahydropterin synthase	Domain	Interproscan
PF02787 all species →	CPSase_L_D3	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	Domain	Interproscan
PF02142 all species →	MGS	MGS-like domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan
PF00343 all species →	Phosphorylase	Carbohydrate phosphorylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR000073 all species →	Domain	Alpha/beta hydrolase fold-1	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR050216 all species →	Family	Leucine-rich repeat domain-containing protein	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR006287 all species →	Family	Protein/nucleic acid deglycase DJ-1	Interproscan
IPR050325 all species →	Family	Protein/nucleic acid deglycase	Interproscan
IPR029062 all species →	Homologous_superfamily	Class I glutamine amidotransferase-like	Interproscan
IPR002818 all species →	Domain	DJ-1/PfpI	Interproscan
IPR051135 all species →	Family	Gal/GlcNAc/GalNAc Sulfotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039103 all species →	Family	Centrosomal protein Spd-2/CEP192	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR013103 all species →	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR007115 all species →	Family	6-pyruvoyl tetrahydropterin synthase/QueD family	Interproscan
IPR022469 all species →	Active_site	6-pyruvoyl tetrahydropterin synthase, histidine active site	Interproscan
IPR038418 all species →	Homologous_superfamily	6-pyruvoyl tetrahydropterin synthase/QueD superfamily	Interproscan
IPR036914 all species →	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR002195 all species →	Conserved_site	Dihydroorotase, conserved site	Interproscan
IPR005480 all species →	Domain	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	Interproscan
IPR011607 all species →	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR036897 all species →	Homologous_superfamily	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily	Interproscan
IPR005483 all species →	Domain	Carbamoyl-phosphate synthase large subunit, CPSase domain	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan
IPR000811 all species →	Family	Glycosyl transferase, family 35	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48051 all species →	-	Interproscan
PTHR48094 all species →	PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED	Interproscan
PTHR10704 all species →	CARBOHYDRATE SULFOTRANSFERASE	Interproscan
PTHR16029 all species →	UNCHARACTERIZED	Interproscan
PTHR42648 all species →	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR12589 all species →	PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE	Interproscan
PTHR47501 all species →	TRANSPOSASE-RELATED	Interproscan
PTHR11405 all species →	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan
PTHR11468 all species →	GLYCOGEN PHOSPHORYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0046295 all species →	Biological Process	glycolate biosynthetic process	Interproscan
GO:1901215 all species →	Biological Process	obsolete negative regulation of neuron death	Interproscan
GO:1903189 all species →	Biological Process	glyoxal metabolic process	Interproscan
GO:0001517 all species →	Molecular Function	N-acetylglucosamine 6-O-sulfotransferase activity	Interproscan
GO:0006044 all species →	Biological Process	N-acetylglucosamine metabolic process	Interproscan
GO:0006790 all species →	Biological Process	sulfur compound metabolic process	Interproscan
GO:0000242 all species →	Cellular Component	pericentriolar material	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan
GO:0007099 all species →	Biological Process	centriole replication	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0051298 all species →	Biological Process	centrosome duplication	Interproscan
GO:0071539 all species →	Biological Process	protein localization to centrosome	Interproscan
GO:0090222 all species →	Biological Process	centrosome-templated microtubule nucleation	Interproscan
GO:0090307 all species →	Biological Process	mitotic spindle assembly	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003874 all species →	Molecular Function	6-pyruvoyltetrahydropterin synthase activity	Interproscan
GO:0006729 all species →	Biological Process	tetrahydrobiopterin biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016812 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0004070 all species →	Molecular Function	aspartate carbamoyltransferase activity	Interproscan
GO:0004088 all species →	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0004151 all species →	Molecular Function	dihydroorotase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006207 all species →	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan
GO:0006228 all species →	Biological Process	UTP biosynthetic process	Interproscan
GO:0006541 all species →	Biological Process	glutamine metabolic process	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0019240 all species →	Biological Process	citrulline biosynthetic process	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005980 all species →	Biological Process	glycogen catabolic process	Interproscan
GO:0008184 all species →	Molecular Function	glycogen phosphorylase activity	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05687	PARK7; protein DJ-1	EC:3.5.1.124	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.