Detailed information of g562.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_027052096.1, CAP-Gly domain-containing linker protein 1-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q9UDT6CAP-Gly domain-containing linker protein 2 OS=Homo sapiens OX=9606 GN=CLIP2 PE=1 SV=1
Q9Z0H8CAP-Gly domain-containing linker protein 2 OS=Mus musculus OX=10090 GN=Clip2 PE=1 SV=2
O55156CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus OX=10116 GN=Clip2 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|Cullin
Ubiquitin FamilyE3|E3 activity RING|PHD
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628PHDPHD-fingerDomainInterproscan
PF13832zf-HC5HC2H_2PHD-zinc-finger like domainDomainInterproscan
PF00754F5_F8_type_CF5/8 type C domainDomainInterproscan
PF16641CLIP1_ZNFCLIP1 zinc knuckleFamilyInterproscan
PF01302CAP_GLYCAP-Gly domainDomainInterproscan
PF03810IBN_NImportin-beta N-terminal domainRepeatInterproscan
PF08389Xpo1Exportin 1-like proteinRepeatInterproscan
PF00888CullinCullin familyRepeatInterproscan
PF10557Cullin_Nedd8Cullin protein neddylation domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF06679DUF1180Protein of unknown function (DUF1180)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR034732DomainExtended PHD (ePHD) domainInterproscan
IPR050701FamilyHistone Modification RegulatorInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR000421DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR008979Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR000938DomainCAP Gly-rich domainInterproscan
IPR036859Homologous_superfamilyCAP Gly-rich domain superfamilyInterproscan
IPR032108DomainCLIP1, zinc knuckleInterproscan
IPR001494DomainImportin-beta, N-terminal domainInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR013598DomainExportin-1/Importin-beta-likeInterproscan
IPR040016FamilyExportin-6Interproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036317Homologous_superfamilyCullin homology domain superfamilyInterproscan
IPR016159Homologous_superfamilyCullin repeat-like-containing domain superfamilyInterproscan
IPR016157Conserved_siteCullin, conserved siteInterproscan
IPR016158DomainCullin homology domainInterproscan
IPR001373DomainCullin, N-terminalInterproscan
IPR019559DomainCullin protein, neddylation domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR045093FamilyCullinInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR009565FamilyMembrane protein FAM174-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13793PHD FINGER PROTEINSInterproscan
PTHR24543MULTICOPPER OXIDASE-RELATEDInterproscan
PTHR18916DYNACTIN 1-RELATED MICROTUBULE-BINDINGInterproscan
PTHR21452EXPORTIN-6Interproscan
PTHR11932CULLINInterproscan
PTHR19856WD-REPEATCONTAINING PROTEIN WDR1Interproscan
PTHR28607EXPRESSED PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005938Cellular Componentcell cortexInterproscan
GO:0031122Biological Processcytoplasmic microtubule organizationInterproscan
GO:0035371Cellular Componentmicrotubule plus-endInterproscan
GO:0051010Molecular Functionmicrotubule plus-end bindingInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0031267Molecular Functionsmall GTPase bindingInterproscan
GO:0005049Molecular Functionnuclear export signal receptor activityInterproscan
GO:0006611Biological Processprotein export from nucleusInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0031461Cellular Componentcullin-RING ubiquitin ligase complexInterproscan
GO:0031625Molecular Functionubiquitin protein ligase bindingInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0019005Cellular ComponentSCF ubiquitin ligase complexInterproscan
GO:0030674Molecular Functionprotein-macromolecule adaptor activityInterproscan
GO:0031146Biological ProcessSCF-dependent proteasomal ubiquitin-dependent protein catabolic processInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0030042Biological Processactin filament depolymerizationInterproscan
GO:0030864Cellular Componentcortical actin cytoskeletonInterproscan
GO:0040011Biological ProcesslocomotionInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02916RP-L35, MRPL35, rpmI; large subunit ribosomal protein L35-Cytoskeleton proteinsko04812deepkoala
Chromosome and associated proteinsko03036deepkoala
Nucleocytoplasmic transportko03013deepkoala
Ubiquitin systemko04121deepkoala
Osteoclast differentiationko04380deepkoala
Cilium and associated proteinsko03037deepkoala
Ribosomeko03011deepkoala

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