Gene detail

Detailed information of g563.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_048476880.1, serine/arginine repetitive matrix protein 2-like [Rhincodon typus]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UQ35	Serine/arginine repetitive matrix protein 2 OS=Homo sapiens OX=9606 GN=SRRM2 PE=1 SV=2
Q8BTI8	Serine/arginine repetitive matrix protein 2 OS=Mus musculus OX=10090 GN=Srrm2 PE=1 SV=3
Q9U213	SRRM2 protein homolog rsr-2 OS=Caenorhabditis elegans OX=6239 GN=rsr-2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000047 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000157 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000940 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002375 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003244 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003387 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003415 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0005915 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01490 all species →	Aa_trans	Transmembrane amino acid transporter protein	Family	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF08385 all species →	DHC_N1	Dynein heavy chain, N-terminal region 1	Family	Interproscan
PF21032 all species →	PROPPIN	PROPPIN	Repeat	Interproscan
PF08312 all species →	cwf21	cwf21 domain	Domain	Interproscan
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF02423 all species →	OCD_Mu_crystall	Ornithine cyclodeaminase/mu-crystallin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013057 all species →	Domain	Amino acid transporter, transmembrane domain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR013594 all species →	Domain	Dynein heavy chain, tail	Interproscan
IPR048720 all species →	Family	PROPPIN	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR027124 all species →	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR013170 all species →	Domain	mRNA splicing factor Cwf21 domain	Interproscan
IPR052109 all species →	Family	Serine/Arginine Repetitive Matrix Domain-Containing Protein	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR043324 all species →	Domain	PKHG1/2/3, pleckstrin homology (PH) domain	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR052612 all species →	Family	Atrial Natriuretic Peptide Clearance Receptor	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan
IPR003462 all species →	Family	Ornithine cyclodeaminase/mu-crystallin	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22950 all species →	AMINO ACID TRANSPORTER	Interproscan
PTHR47331 all species →	PHD-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11227 all species →	WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED	Interproscan
PTHR23227 all species →	BUCENTAUR RELATED	Interproscan
PTHR34755 all species →	SERINE/ARGININE REPETITIVE MATRIX PROTEIN 3-RELATED	Interproscan
PTHR45924 all species →	FI17866P1	Interproscan
PTHR44755 all species →	NATRIURETIC PEPTIDE RECEPTOR 3-RELATED	Interproscan
PTHR13812 all species →	KETIMINE REDUCTASE MU-CRYSTALLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003333 all species →	Biological Process	amino acid transmembrane transport	Interproscan
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0015179 all species →	Molecular Function	L-amino acid transmembrane transporter activity	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006497 all species →	Biological Process	protein lipidation	Interproscan
GO:0019898 all species →	Cellular Component	extrinsic component of membrane	Interproscan
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0034045 all species →	Cellular Component	phagophore assembly site membrane	Interproscan
GO:0034497 all species →	Biological Process	protein localization to phagophore assembly site	Interproscan
GO:0044804 all species →	Biological Process	nucleophagy	Interproscan
GO:0080025 all species →	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0017046 all species →	Molecular Function	peptide hormone binding	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0042562 all species →	Molecular Function	hormone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15015	SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter)	-	Transporters	ko02000	deepkoala
K23859	PLEKHG1_2_3; pleckstrin homology domain-containing family G member 1/2/3	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.