Gene detail

Detailed information of g565.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_015763991.1, PREDICTED: coiled-coil domain-containing protein 174-like [Acropora digitifera]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PII3	Coiled-coil domain-containing protein 174 OS=Homo sapiens OX=9606 GN=CCDC174 PE=1 SV=3
Q5ZIH9	Coiled-coil domain-containing protein 174 OS=Gallus gallus OX=9031 GN=CCDC174 PE=2 SV=1
Q5PQS7	Coiled-coil domain-containing protein 174 OS=Rattus norvegicus OX=10116 GN=Ccdc174 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000145 (this species only)
Orthogroup (gene family)	OG0004329 (this species only)
Orthogroup (gene family)	OG0004874 (this species only)
Orthogroup (gene family)	OG0004947 (this species only)
Orthogroup (gene family)	OG0004992 (this species only)
Orthogroup (gene family)	OG0005143 (this species only)
Orthogroup (gene family)	OG0005606 (this species only)
Orthogroup (gene family)	OG0012568 (this species only)
Orthogroup (gene family)	OG0016658 (this species only)
Orthogroup (gene family)	OG0016714 (this species only)
Orthogroup (gene family)	OG0029712 (this species only)
Orthogroup (gene family)	OG0032609 (this species only)
Orthogroup (gene family)	OG0059879 (this species only)
Orthogroup (gene family)	OG0172711 (this species only)
Transcription factor family	ARID · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12624 all species →	Chorein_N	VPS13-like, N-terminal	Domain	Interproscan
PF12031 all species →	BAF250_C	SWI/SNF-like complex subunit BAF250/Osa	Repeat	Interproscan
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan
PF00083 all species →	Sugar_tr	Sugar (and other) transporter	Family	Interproscan
PF14724 all species →	mit_SMPDase	Mitochondrial-associated sphingomyelin phosphodiesterase	Family	Interproscan
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan
PF01878 all species →	EVE	EVE domain	Domain	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan
PF13300 all species →	DUF4078	Domain of unknown function (DUF4078)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026728 all species →	Family	Bridge-like lipid transfer protein family member 3A/B	Interproscan
IPR026854 all species →	Domain	Vacuolar protein sorting-associated protein 13-like, N-terminal domain	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR033388 all species →	Domain	SWI/SNF-like complex subunit BAF250, C-terminal	Interproscan
IPR021906 all species →	Family	SWI/SNF-like complex subunit BAF250/Osa	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR005828 all species →	Family	Major facilitator, sugar transporter-like	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR005829 all species →	Conserved_site	Sugar transporter, conserved site	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR024129 all species →	Family	Sphingomyelin phosphodiesterase 4	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR033551 all species →	Family	Dynein regulatory complex subunit 7	Interproscan
IPR047197 all species →	Domain	Thymocyte nuclear protein 1-like, EVE domain	Interproscan
IPR002740 all species →	Domain	EVE domain	Interproscan
IPR052181 all species →	Family	5-Hydroxymethylcytosine binding	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR000110 all species →	Family	Small ribosomal subunit protein bS1	Interproscan
IPR035104 all species →	Family	Ribosomal protein S1-like	Interproscan
IPR050437 all species →	Family	Bacterial ribosomal protein bS1	Interproscan
IPR025066 all species →	Family	Coiled-coil domain-containing protein 174-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22774 all species →	UNCHARACTERIZED	Interproscan
PTHR12656 all species →	BRG-1 ASSOCIATED FACTOR 250 BAF250	Interproscan
PTHR24064 all species →	SOLUTE CARRIER FAMILY 22 MEMBER	Interproscan
PTHR12988 all species →	SPHINGOMYELIN PHOSPHODIESTERASE 4	Interproscan
PTHR33395 all species →	TRANSCRIPTASE, PUTATIVE-RELATED-RELATED	Interproscan
PTHR35249 all species →	DYNEIN REGULATORY COMPLEX SUBUNIT 7	Interproscan
PTHR14087 all species →	THYMOCYTE NUCLEAR PROTEIN 1	Interproscan
PTHR47018 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR10724 all species →	30S RIBOSOMAL PROTEIN S1	Interproscan
PTHR15885 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016514 all species →	Cellular Component	SWI/SNF complex	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035060 all species →	Cellular Component	brahma complex	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0071565 all species →	Cellular Component	nBAF complex	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0050290 all species →	Molecular Function	sphingomyelin phosphodiesterase D activity	Interproscan
GO:0006685 all species →	Biological Process	sphingomyelin catabolic process	Interproscan
GO:0046475 all species →	Biological Process	glycerophospholipid catabolic process	Interproscan
GO:0046513 all species →	Biological Process	ceramide biosynthetic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0007508 all species →	Biological Process	larval heart development	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0061343 all species →	Biological Process	cell adhesion involved in heart morphogenesis	Interproscan
GO:0031514 all species →	Cellular Component	motile cilium	Interproscan
GO:0048870 all species →	Biological Process	cell motility	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02945	RP-S1, rpsA; small subunit ribosomal protein S1	-	Ribosome	ko03011	deepkoala
K11653	ARID1; AT-rich interactive domain-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala
K12353	SMPD4; sphingomyelin phosphodiesterase 4	EC:3.1.4.12	Sphingolipid metabolism	ko00600	deepkoala
K25178	CCDC174; coiled-coil domain-containing protein 174	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.