Gene detail

Detailed information of g565.t1 in Paracondylactis sinensis

Genomic Location: Chr_1:6799780...6810415
NR annotation: no NCBI-NR hit recorded
Species Paracondylactis sinensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g565.t1

ATGTCCGATAAACGTTTTGCACGTGTGACAAGCGATCCACGTTTTAAGAGAGTTGACCGAAAACGAAGGAAGGTCAAAATAGATTCCAGGTTTGAGCGAATGTTCAAAGACAAAACCTTTACAACGAAACACTTTGTTGATAAGCGAGGTGCTATAATAGGAAAAACATCAAAAGAAGACTTGCGACAGTTTTATGATCTTTCTGATGATGATGATAAAGATGAATCACGAGTAGTTCACAGGGATTCAAAGAAGAGGTCTAAATCAAAAGCTAAAACAAATGGAACAGGATTAGAAAAGAAGACAAAGAAAAAAGAACAATCATCATTTACTCCACTTGAAGAAGAAGAAAATGAAAAAAATAAACACATCAGCAAGAAAGATTTTCAAATCCAAAGAACTATCATGGGATCCAGTGATGATGAAGATGACAGCAGTGAGGATGAAGAAAGTGGAAATGAAAGGACAGTTGATCTAGCAAGGGGAGAAGGGAATTTAGACACATCATCATCAGATGATGATGATGATGATGATGATGATGATGAGGTGAAGAAAGGAGGAAATGAAATGGATATTAATGAGGCTGGGAGTAGTAACAACAAACAGGGTACTTTGCAAGAAAATGATGCCAAGAATGACAATTATGATACAGATACAGATGATGAAATTGACTTGCAGGATGACGAAATAGACCACCAATGGGCAGAACTTGATCGCAATATTCACAGAAGTAGTGATGTAACAAGAAGAGTTGCTGTGTGTAACTTGGATTGGGATAAAATCACAGCCACAGATCTGTTTGTTCTGTTTAGTTCCATCAAAAAAGGAGTTGTTCAATCTGTAAAGATTTACCCATCAGAATATGGCTTAGAGAGATTGAAGAATGAAGAATGCTATGGTCCTGAAGAACTAAGAGGTCAAGAAGATGATCTTGATGATAAAAATGTAGAGGGATCAAGTTTTTCAAGGGAAAAGCTGCGTCAGTATCAAATAAATCGACTAAAGTATTACTATGCTGTAGTGGAATGTGACTCTACAGCAACAAGTAACCATATCTATGAAGAGTTTGATGGGGTAGAGTTTGAATTGAGTGGTAATCTTATTGATCTGAGATTCATACCCGATGACATGGAGTTTGAACATGAACCAACATCTGTCGCAACTGAAATGCCAACATTGGCCACTTACAGACCACCAGAGTTTGAGACCACAGCGCTGCACCAGACCAATGTCAAACTGACATGGGATGAGACTGACTCGAATAGATTAAAGGCGACAATGAAATCGTTTAGTCAAGGTGATCTGCAAGATATGGACTTTGAGGCGTACTTGGCATCCTCGGACGATGAGGGAGAAGAGGTTTTGGGTCTGGCTAGTGATGAAGATGAAGGTAGTCATTCTGAAGATGAAGAAGAAAAGATTGAAAAATATAAGAAACTTGTTCAAGAGATTGATTCCAAAGAACATGAAGATGACAATGAAAATGAAATGGAGATCACGTGGGAACCAGGCTTAAAGGATTCTGCGTTGGACCTCGTGGCGAAGAAACGAGCGGAGAAAGAGGAGAAAAGTCTGACCGCGTGGGAAAAATACCTTAACAAAAAGAAAGAGAAAAGAAAAGAGAGGCGCAAAAAGGAGAAAGAGACGAAACTGCAGAAGAATGATGCCGCACAAGAAGAAGACGAGGACGACATTCCAGAAGGTGTGGATATGTCAGACCCGTACTTTAGCCAAGACTTTGGGCCTGACTTCCCTGCCAACAACAACAGCGACGGGGTTAAAACTAAACCCGTCGCCAAAAAGAAAGGAAAAAAACAGGTCACAGAAACTGAAGAAGAAAAGAAACGGAAGGAGGAGCTCGAGTTACTCCTGATGGACGGCAAGGAAGAGCCACAACATTTTAGCTTAAAAGGAATCATAGAAAACGAGAAGAAGAAAAACAAACGAAAGAAAAGGCGACAACAAGAAGAGCAGACGGCAGAAGATCATTTTCATGTGGATGTTGACGACCCTCGTTTTTCTGCTCTTTACTCGTCTCATCTTTATGCCATCGACCCTTCAGATCCACATTTCAAAAAAACCAAGGCTATGGAAGCTATTTTTGACGAACGACAACGAAGAAGACAAAAGAAAAAACATGTTCCCGAGGAGTTTACTCAAAATATAACGACAGCTGAACACGATGAAGGTGAAAAATCCACCCTAGATCCAAGTTTATCGCTGCTCGTAAAGTCAGTCAAGTCGAAGACAGGAGAATTCAATCAACGAAGAAAGAAACAAAAAACTACAAAATAA

Transcript

g565.t1

GGTGAAAGAAGAGATTAATGTGGAAAAATATCGAAATATCTTCTCGAAAACTTTATGAATTTCACTCTTTGACTCGCTATAGGTCATATAAGAAGACGTTCCGTATCCCTTGTCAGAAAATTCTTGGAGTTTAAGGCGTTTAGCGAAAAAAATGTCCGATAAACGTTTTGCACGTGTGACAAGCGATCCACGTTTTAAGAGAGTTGACCGAAAACGAAGGAAGGTCAAAATAGATTCCAGGTTTGAGCGAATGTTCAAAGACAAAACCTTTACAACGAAACACTTTGTTGATAAGCGAGGTGCTATAATAGGAAAAACATCAAAAGAAGACTTGCGACAGTTTTATGATCTTTCTGATGATGATGATAAAGATGAATCACGAGTAGTTCACAGGGATTCAAAGAAGAGGTCTAAATCAAAAGCTAAAACAAATGGAACAGGATTAGAAAAGAAGACAAAGAAAAAAGAACAATCATCATTTACTCCACTTGAAGAAGAAGAAAATGAAAAAAATAAACACATCAGCAAGAAAGATTTTCAAATCCAAAGAACTATCATGGGATCCAGTGATGATGAAGATGACAGCAGTGAGGATGAAGAAAGTGGAAATGAAAGGACAGTTGATCTAGCAAGGGGAGAAGGGAATTTAGACACATCATCATCAGATGATGATGATGATGATGATGATGATGATGAGGTGAAGAAAGGAGGAAATGAAATGGATATTAATGAGGCTGGGAGTAGTAACAACAAACAGGGTACTTTGCAAGAAAATGATGCCAAGAATGACAATTATGATACAGATACAGATGATGAAATTGACTTGCAGGATGACGAAATAGACCACCAATGGGCAGAACTTGATCGCAATATTCACAGAAGTAGTGATGTAACAAGAAGAGTTGCTGTGTGTAACTTGGATTGGGATAAAATCACAGCCACAGATCTGTTTGTTCTGTTTAGTTCCATCAAAAAAGGAGTTGTTCAATCTGTAAAGATTTACCCATCAGAATATGGCTTAGAGAGATTGAAGAATGAAGAATGCTATGGTCCTGAAGAACTAAGAGGTCAAGAAGATGATCTTGATGATAAAAATGTAGAGGGATCAAGTTTTTCAAGGGAAAAGCTGCGTCAGTATCAAATAAATCGACTAAAGTATTACTATGCTGTAGTGGAATGTGACTCTACAGCAACAAGTAACCATATCTATGAAGAGTTTGATGGGGTAGAGTTTGAATTGAGTGGTAATCTTATTGATCTGAGATTCATACCCGATGACATGGAGTTTGAACATGAACCAACATCTGTCGCAACTGAAATGCCAACATTGGCCACTTACAGACCACCAGAGTTTGAGACCACAGCGCTGCACCAGACCAATGTCAAACTGACATGGGATGAGACTGACTCGAATAGATTAAAGGCGACAATGAAATCGTTTAGTCAAGGTGATCTGCAAGATATGGACTTTGAGGCGTACTTGGCATCCTCGGACGATGAGGGAGAAGAGGTTTTGGGTCTGGCTAGTGATGAAGATGAAGGTAGTCATTCTGAAGATGAAGAAGAAAAGATTGAAAAATATAAGAAACTTGTTCAAGAGATTGATTCCAAAGAACATGAAGATGACAATGAAAATGAAATGGAGATCACGTGGGAACCAGGCTTAAAGGATTCTGCGTTGGACCTCGTGGCGAAGAAACGAGCGGAGAAAGAGGAGAAAAGTCTGACCGCGTGGGAAAAATACCTTAACAAAAAGAAAGAGAAAAGAAAAGAGAGGCGCAAAAAGGAGAAAGAGACGAAACTGCAGAAGAATGATGCCGCACAAGAAGAAGACGAGGACGACATTCCAGAAGGTGTGGATATGTCAGACCCGTACTTTAGCCAAGACTTTGGGCCTGACTTCCCTGCCAACAACAACAGCGACGGGGTTAAAACTAAACCCGTCGCCAAAAAGAAAGGAAAAAAACAGGTCACAGAAACTGAAGAAGAAAAGAAACGGAAGGAGGAGCTCGAGTTACTCCTGATGGACGGCAAGGAAGAGCCACAACATTTTAGCTTAAAAGGAATCATAGAAAACGAGAAGAAGAAAAACAAACGAAAGAAAAGGCGACAACAAGAAGAGCAGACGGCAGAAGATCATTTTCATGTGGATGTTGACGACCCTCGTTTTTCTGCTCTTTACTCGTCTCATCTTTATGCCATCGACCCTTCAGATCCACATTTCAAAAAAACCAAGGCTATGGAAGCTATTTTTGACGAACGACAACGAAGAAGACAAAAGAAAAAACATGTTCCCGAGGAGTTTACTCAAAATATAACGACAGCTGAACACGATGAAGGTGAAAAATCCACCCTAGATCCAAGTTTATCGCTGCTCGTAAAGTCAGTCAAGTCGAAGACAGGAGAATTCAATCAACGAAGAAAGAAACAAAAAACTACAAAATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08159 all species →	NUC153	NUC153 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039754 all species →	Family	Pre-rRNA-processing protein Esf1	Interproscan
IPR012580 all species →	Domain	NUC153	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12202 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g565.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.