Gene detail

Detailed information of g5652.t1 in Acropora digitifera

Genomic Location: chr3Alt:6220613...6238471
NR annotation: XP_029211940.2, SH3 domain-binding protein 2-like isoform X2 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N264	Rho GTPase-activating protein 24 OS=Homo sapiens OX=9606 GN=ARHGAP24 PE=1 SV=2
Q5U2Z7	Rho GTPase-activating protein 24 OS=Rattus norvegicus OX=10116 GN=Arhgap24 PE=1 SV=2
Q8C4V1	Rho GTPase-activating protein 24 OS=Mus musculus OX=10090 GN=Arhgap24 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR035848 all species →	Family	SH3 domain-binding protein 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15126 all species →	SH3-BINDING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0017124 all species →	Molecular Function	SH3 domain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07984	SH3BP2; SH3-domain binding protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g5652.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

101.4Max TPM

73.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	73.45	101.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	101.36
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	93.01
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	89.76
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	88.14
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	88.08
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	87.92
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	87.91
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	85.18
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	84.23
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	83.37
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	81.62
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	79.36
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	78.53
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	77.41
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	75.50
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	75.26
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	74.99
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	74.95
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	74.70
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	73.07
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	72.63
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	72.08
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	69.94
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	69.74
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	68.67
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	66.72
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	66.50
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	66.48
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	66.46
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	64.15
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	63.28
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	63.06
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	62.33
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	59.80
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	59.75
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	59.29
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	57.92
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	51.22
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	50.08

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.