Gene detail

Detailed information of g567.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_012558059.2, brefeldin A-inhibited guanine nucleotide-exchange protein 3 isoform X1 [Hydra vulgaris]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5TH69	Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Homo sapiens OX=9606 GN=ARFGEF3 PE=1 SV=3
Q3UGY8	Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Mus musculus OX=10090 GN=Arfgef3 PE=1 SV=1
P50430	Arylsulfatase B OS=Rattus norvegicus OX=10116 GN=Arsb PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000167 (this species only)
Orthogroup (gene family)	OG0000240 (this species only)
Orthogroup (gene family)	OG0000496 (this species only)
Orthogroup (gene family)	OG0001456 (this species only)
Orthogroup (gene family)	OG0004304 (this species only)
Orthogroup (gene family)	OG0004365 (this species only)
Orthogroup (gene family)	OG0006126 (this species only)
Orthogroup (gene family)	OG0006981 (this species only)
Orthogroup (gene family)	OG0007111 (this species only)
Orthogroup (gene family)	OG0008336 (this species only)
Orthogroup (gene family)	OG0010719 (this species only)
Orthogroup (gene family)	OG0017418 (this species only)
Orthogroup (gene family)	OG0039906 (this species only)
Orthogroup (gene family)	OG0173426 (this species only)
Orthogroup (gene family)	OG0174525 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612 all species →	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan
PF00476 all species →	DNA_pol_A	DNA polymerase family A	Family	Interproscan
PF01367 all species →	5_3_exonuc	5'-3' exonuclease, C-terminal SAM fold	Domain	Interproscan
PF02739 all species →	5_3_exonuc_N	5'-3' exonuclease, N-terminal resolvase-like domain	Domain	Interproscan
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF00014 all species →	Kunitz_BPTI	Kunitz/Bovine pancreatic trypsin inhibitor domain	Domain	Interproscan
PF06588 all species →	Muskelin_N	Muskelin N-terminus	Family	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF01327 all species →	Pep_deformylase	Polypeptide deformylase	Domain	Interproscan
PF16213 all species →	DCB	Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain	Domain	Interproscan
PF20252 all species →	BIG2_C	BIG2 C-terminal domain	Domain	Interproscan
PF09324 all species →	Sec7-like_HDS	Mon2/Sec7/BIG1-like, HDS	Domain	Interproscan
PF00884 all species →	Sulfatase	Sulfatase	Family	Interproscan
PF01008 all species →	IF-2B	Initiation factor 2 subunit family	Family	Interproscan
PF16367 all species →	RRM_7	RNA recognition motif	Domain	Interproscan
PF16366 all species →	CEBP_ZZ	Cytoplasmic polyadenylation element-binding protein ZZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR002562 all species →	Domain	3'-5' exonuclease domain	Interproscan
IPR020045 all species →	Domain	DNA polymerase I-like, H3TH domain	Interproscan
IPR036279 all species →	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR001098 all species →	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan
IPR002298 all species →	Family	DNA polymerase A	Interproscan
IPR019760 all species →	Conserved_site	DNA-directed DNA polymerase, family A, conserved site	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR020046 all species →	Domain	5'-3' exonuclease, alpha-helical arch, N-terminal	Interproscan
IPR002421 all species →	Domain	5'-3' exonuclease	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR008918 all species →	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR018320 all species →	Family	DNA polymerase 1	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR052004 all species →	Family	Axonemal Dynein Assembly Factor 4	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR008978 all species →	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR002223 all species →	Domain	Pancreatic trypsin inhibitor Kunitz domain	Interproscan
IPR036880 all species →	Homologous_superfamily	Pancreatic trypsin inhibitor Kunitz domain superfamily	Interproscan
IPR020901 all species →	Conserved_site	Proteinase inhibitor I2, Kunitz, conserved site	Interproscan
IPR050098 all species →	Family	Kunitz-type Serine Protease Inhibitor	Interproscan
IPR010565 all species →	Domain	Muskelin, N-terminal	Interproscan
IPR052456 all species →	Family	CTLH complex component protein	Interproscan
IPR050449 all species →	Family	Ephrin receptor tyrosine kinases	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR023635 all species →	Family	Peptide deformylase	Interproscan
IPR036821 all species →	Homologous_superfamily	Peptide deformylase superfamily	Interproscan
IPR032629 all species →	Domain	Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain	Interproscan
IPR046455 all species →	Domain	Sec7/BIG1-like, C-terminal domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR015403 all species →	Domain	Mon2/Sec7/BIG1-like, HDS	Interproscan
IPR027649 all species →	Family	Inverted formin-2	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR047115 all species →	Family	Arylsulfatase B	Interproscan
IPR000917 all species →	Domain	Sulfatase, N-terminal	Interproscan
IPR024607 all species →	Conserved_site	Sulfatase, conserved site	Interproscan
IPR042529 all species →	Homologous_superfamily	Initiation factor 2B-like, C-terminal	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR000649 all species →	Family	Initiation factor 2B-related	Interproscan
IPR051855 all species →	Family	Eukaryotic initiation factor 2B subunit beta	Interproscan
IPR034819 all species →	Family	Cytoplasmic polyadenylation element-binding protein	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR038446 all species →	Homologous_superfamily	CEBP, ZZ domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR032296 all species →	Domain	Cytoplasmic polyadenylation element-binding protein, ZZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10133 all species →	DNA POLYMERASE I	Interproscan
PTHR46492 all species →	DYNEIN ASSEMBLY FACTOR 4, AXONEMAL	Interproscan
PTHR10083 all species →	KUNITZ-TYPE PROTEASE INHIBITOR-RELATED	Interproscan
PTHR15526 all species →	MUSKELIN	Interproscan
PTHR46877 all species →	EPH RECEPTOR A5	Interproscan
PTHR10458 all species →	PEPTIDE DEFORMYLASE	Interproscan
PTHR10663 all species →	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	Interproscan
PTHR46345 all species →	INVERTED FORMIN-2	Interproscan
PTHR10342 all species →	ARYLSULFATASE	Interproscan
PTHR45859 all species →	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA	Interproscan
PTHR12566 all species →	CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0008409 all species →	Molecular Function	5'-3' exonuclease activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003341 all species →	Biological Process	cilium movement	Interproscan
GO:0036158 all species →	Biological Process	outer dynein arm assembly	Interproscan
GO:0036159 all species →	Biological Process	inner dynein arm assembly	Interproscan
GO:0004867 all species →	Molecular Function	serine-type endopeptidase inhibitor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005005 all species →	Molecular Function	transmembrane-ephrin receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030425 all species →	Cellular Component	dendrite	Interproscan
GO:0048013 all species →	Biological Process	ephrin receptor signaling pathway	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0018206 all species →	Biological Process	peptidyl-methionine modification	Interproscan
GO:0042586 all species →	Molecular Function	peptide deformylase activity	Interproscan
GO:0008484 all species →	Molecular Function	sulfuric ester hydrolase activity	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005851 all species →	Cellular Component	eukaryotic translation initiation factor 2B complex	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0006417 all species →	Biological Process	regulation of translation	Interproscan
GO:0045182 all species →	Molecular Function	translation regulator activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01462	PDF, def; peptide deformylase	EC:3.5.1.88	Enzymes with EC numbers	-	deepkoala
K02335	polA; DNA polymerase I	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala
K02602	CPEB, ORB; cytoplasmic polyadenylation element-binding protein	-	Messenger RNA biogenesis	ko03019	deepkoala
K03754	EIF2B2; translation initiation factor eIF-2B subunit beta	-	Translation factors	ko03012	deepkoala
K19758	DNAAF4, DYX1C1; dynein axonemal assembly factor 4	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.