Gene detail

Detailed information of g568.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: UES72735.1, Runt-like protein [Rhopilema esculentum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q13950	Runt-related transcription factor 2 OS=Homo sapiens OX=9606 GN=RUNX2 PE=1 SV=2
Q63046	Runt-related transcription factor 1 OS=Rattus norvegicus OX=10116 GN=Runx1 PE=1 SV=1
Q03347	Runt-related transcription factor 1 OS=Mus musculus OX=10090 GN=Runx1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00924	MS_channel_2nd	Mechanosensitive ion channel, beta-domain	Domain	Interproscan
PF01467	CTP_transf_like	Cytidylyltransferase-like	Domain	Interproscan
PF21178	Itf52_C	Intraflagellar transport protein 52, C-terminal domain	Domain	Interproscan
PF09822	ABC_transp_aux	ABC-type uncharacterized transport system	Family	Interproscan
PF01951	Archease	Archease protein family (MTH1598/TM1083)	Domain	Interproscan
PF01401	Peptidase_M2	Angiotensin-converting enzyme	Family	Interproscan
PF00853	Runt	Runt domain	Domain	Interproscan
PF00406	ADK	Adenylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006685	Domain	Mechanosensitive ion channel MscS	Interproscan
IPR010920	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR023408	Homologous_superfamily	Mechanosensitive ion channel MscS, beta-domain superfamily	Interproscan
IPR030192	Family	Miniconductance mechanosensitive channel YbdG	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR004821	Domain	Cytidyltransferase-like domain	Interproscan
IPR051182	Family	Eukaryotic NMN adenylyltransferase	Interproscan
IPR005248	Family	Nicotinate/nicotinamide nucleotide adenylyltransferase	Interproscan
IPR039975	Family	Intraflagellar transport protein 52 homolog	Interproscan
IPR048643	Domain	Intraflagellar transport protein 52, C-terminal domain	Interproscan
IPR019196	Domain	ABC-type uncharacterised transport system	Interproscan
IPR036820	Homologous_superfamily	Archease domain superfamily	Interproscan
IPR002804	Family	Archease	Interproscan
IPR023572	Domain	Archease domain	Interproscan
IPR001548	Family	Peptidase M2, peptidyl-dipeptidase A	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR013524	Domain	Runt domain	Interproscan
IPR000040	Family	Acute myeloid leukemia 1 protein (AML1)/Runt	Interproscan
IPR012346	Homologous_superfamily	p53/RUNT-type transcription factor, DNA-binding domain superfamily	Interproscan
IPR052634	Family	Sperm flagellar development and bone growth associated protein	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30414	UNCHARACTERIZED	Interproscan
PTHR12039	NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE	Interproscan
PTHR12969	NGD5/OSM-6/IFT52	Interproscan
PTHR45532	WD REPEAT-CONTAINING PROTEIN 97	Interproscan
PTHR12682	ARCHEASE	Interproscan
PTHR10514	ANGIOTENSIN-CONVERTING ENZYME	Interproscan
PTHR11950	RUNT RELATED	Interproscan
PTHR35558	SGNH_HYDRO DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR14919	KPL2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008381	Molecular Function	mechanosensitive monoatomic ion channel activity	Interproscan
GO:0071470	Biological Process	cellular response to osmotic stress	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0000309	Molecular Function	nicotinamide-nucleotide adenylyltransferase activity	Interproscan
GO:0004515	Molecular Function	nicotinate-nucleotide adenylyltransferase activity	Interproscan
GO:0009435	Biological Process	NAD biosynthetic process	Interproscan
GO:0016779	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0005814	Cellular Component	centriole	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan
GO:0030992	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073	Biological Process	intraciliary transport	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0006388	Biological Process	tRNA splicing, via endonucleolytic cleavage and ligation	Interproscan
GO:0072669	Cellular Component	tRNA-splicing ligase complex	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008241	Molecular Function	peptidyl-dipeptidase activity	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10435	MAP1LC; microtubule-associated protein 1 light chain	-	Nicotinate and nicotinamide metabolism	ko00760	deepkoala
			Cilium and associated proteins	ko03037	deepkoala
			Cilium and associated proteins	ko03037	deepkoala
			Transfer RNA biogenesis	ko03016	deepkoala
			Cytoskeleton proteins	ko04812	deepkoala