Gene detail

Detailed information of g570.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_002163401.1, myosin-2 essential light chain [Hydra vulgaris]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54357	Myosin-2 essential light chain OS=Drosophila melanogaster OX=7227 GN=Mlc-c PE=1 SV=1
P02605	Myosin light chain 3, skeletal muscle isoform OS=Gallus gallus OX=9031 PE=1 SV=3
P02602	Myosin light chain 1/3, skeletal muscle isoform OS=Oryctolagus cuniculus OX=9986 GN=MYL1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0000546 (this species only)
Orthogroup (gene family)	OG0000568 (this species only)
Orthogroup (gene family)	OG0000606 (this species only)
Orthogroup (gene family)	OG0000679 (this species only)
Orthogroup (gene family)	OG0002557 (this species only)
Orthogroup (gene family)	OG0003806 (this species only)
Orthogroup (gene family)	OG0005228 (this species only)
Orthogroup (gene family)	OG0007062 (this species only)
Orthogroup (gene family)	OG0008513 (this species only)
Orthogroup (gene family)	OG0008550 (this species only)
Orthogroup (gene family)	OG0009633 (this species only)
Orthogroup (gene family)	OG0018748 (this species only)
Orthogroup (gene family)	OG0032538 (this species only)
Orthogroup (gene family)	OG0174231 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06239 all species →	ECSIT_N	Evolutionarily conserved signalling intermediate in Toll pathway	Repeat	Interproscan
PF14784 all species →	ECSIT_C	C-terminal domain of the ECSIT protein	Domain	Interproscan
PF01733 all species →	Nucleoside_tran	Nucleoside transporter	Family	Interproscan
PF14223 all species →	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF13961 all species →	DUF4219	Domain of unknown function (DUF4219)	Domain	Interproscan
PF07727 all species →	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF14464 all species →	Prok-JAB	Prokaryotic homologs of the JAB domain	Family	Interproscan
PF18755 all species →	RAMA	Restriction Enzyme Adenine Methylase Associated	Domain	Interproscan
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF01920 all species →	Prefoldin_2	Prefoldin subunit	Coiled-coil	Interproscan
PF01008 all species →	IF-2B	Initiation factor 2 subunit family	Family	Interproscan
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010418 all species →	Family	ECSIT	Interproscan
IPR046448 all species →	Domain	ECSIT, N-terminal	Interproscan
IPR029342 all species →	Domain	ECSIT, C-terminal domain	Interproscan
IPR002259 all species →	Family	Equilibrative nucleoside transporter	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR034764 all species →	Family	Nucleoside transporter ENT1/ENT2	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR025314 all species →	Domain	Domain of unknown function DUF4219	Interproscan
IPR013103 all species →	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR050242 all species →	Family	JAMM/MPN+ metalloenzymes, peptidase M67A	Interproscan
IPR028090 all species →	Domain	JAB domain, prokaryotic	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan
IPR040843 all species →	Domain	Restriction enzyme adenine methylase associated	Interproscan
IPR005746 all species →	Family	Thioredoxin	Interproscan
IPR017937 all species →	Conserved_site	Thioredoxin, conserved site	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR050230 all species →	Family	Calcium-Regulated Muscle Contraction and Cellular Process	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR039250 all species →	Family	CREBL2/REPTOR-BP	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR051988 all species →	Family	Homologous Recombination Repair RAD51 Paralog	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR009053 all species →	Homologous_superfamily	Prefoldin	Interproscan
IPR002777 all species →	Family	Prefoldin beta-like	Interproscan
IPR000649 all species →	Family	Initiation factor 2B-related	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR027363 all species →	Homologous_superfamily	Methylthioribose-1-phosphate isomerase, N-terminal	Interproscan
IPR005251 all species →	Family	Methylthioribose-1-phosphate isomerase	Interproscan
IPR011559 all species →	Family	Initiation factor 2B alpha/beta/delta	Interproscan
IPR042529 all species →	Homologous_superfamily	Initiation factor 2B-like, C-terminal	Interproscan
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR051703 all species →	Family	NF-kappa-B Signaling Regulator	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13113 all species →	ECSIT EVOLUTIONARILY CONSERVED SIGNALING INTERMEDIATE IN TOLL PATHWAYS	Interproscan
PTHR10332 all species →	EQUILIBRATIVE NUCLEOSIDE TRANSPORTER	Interproscan
PTHR42648 all species →	TRANSPOSASE, PUTATIVE-RELATED	Interproscan
PTHR10410 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	Interproscan
PTHR46115 all species →	THIOREDOXIN-LIKE PROTEIN 1	Interproscan
PTHR23048 all species →	MYOSIN LIGHT CHAIN 1, 3	Interproscan
PTHR21051 all species →	CAMP-RESPONSIVE ELEMENT-BINDING PROTEIN-LIKE 2	Interproscan
PTHR46457 all species →	DNA REPAIR PROTEIN RAD51 HOMOLOG 4	Interproscan
PTHR21431 all species →	PREFOLDIN SUBUNIT 6	Interproscan
PTHR43475 all species →	METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE	Interproscan
PTHR46609 all species →	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0007178 all species →	Biological Process	cell surface receptor protein serine/threonine kinase signaling pathway	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan
GO:0005337 all species →	Molecular Function	nucleoside transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:1901642 all species →	Biological Process	nucleoside transmembrane transport	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0015035 all species →	Molecular Function	protein-disulfide reductase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016460 all species →	Cellular Component	myosin II complex	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0000400 all species →	Molecular Function	four-way junction DNA binding	Interproscan
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005657 all species →	Cellular Component	replication fork	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0008094 all species →	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0033063 all species →	Cellular Component	Rad51B-Rad51C-Rad51D-XRCC2 complex	Interproscan
GO:0042148 all species →	Biological Process	DNA strand invasion	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0016272 all species →	Cellular Component	prefoldin complex	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0051131 all species →	Biological Process	chaperone-mediated protein complex assembly	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan
GO:0019509 all species →	Biological Process	L-methionine salvage from methylthioadenosine	Interproscan
GO:0046523 all species →	Molecular Function	S-methyl-5-thioribose-1-phosphate isomerase activity	Interproscan
GO:0044249 all species →	Biological Process	obsolete cellular biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03671	TXN, trxA; thioredoxin	-	Chaperones and folding catalysts	ko03110	deepkoala
K08963	mtnA; methylthioribose-1-phosphate isomerase	EC:5.3.1.23	Cysteine and methionine metabolism	ko00270	deepkoala
K12751	MYL6; myosin light chain 6	-	Exosome	ko04147	deepkoala
K15014	SLC29A1_2_3, ENT1_2_3; solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3	-	Transporters	ko02000	deepkoala
K24173	MPND; MPN domain-containing protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.