Gene detail

Detailed information of g5701.t1 in Tripedalia maipoensis

Genomic Location: scaffold_2:38961044...38975679
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010305 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00588 all species →	SpoU_methylase	SpoU rRNA Methylase family	Family	Interproscan
PF08032 all species →	SpoU_sub_bind	RNA 2'-O ribose methyltransferase substrate binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001537 all species →	Domain	tRNA/rRNA methyltransferase, SpoU type	Interproscan
IPR013123 all species →	Domain	RNA 2-O ribose methyltransferase, substrate binding	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR047182 all species →	Family	rRNA methyltransferase 1, mitochondrial	Interproscan
IPR047261 all species →	Domain	rRNA methyltransferase 1, methyltransferase domain	Interproscan
IPR029026 all species →	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR029028 all species →	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46103 all species →	RRNA METHYLTRANSFERASE 1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0008173 all species →	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0000154 all species →	Biological Process	rRNA modification	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016435 all species →	Molecular Function	rRNA (guanine) methyltransferase activity	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g5701.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.