Gene detail

Detailed information of g5710.t1 in Acropora digitifera

Genomic Location: chr3Alt:6921346...6942186
NR annotation: XP_015750339.1, PREDICTED: DNA-directed primase/polymerase protein-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5710.t1

ATGGCTGACAGTGACAACAAAGTAAACTCTTTTTATGGAATTGCTCCAAAAAGATATAACAAAAGGTGGGAAGAGAAGAAGATCAAGTTGGAAAAATGTGCCAGGGACTTCAGACAAAATCCAATATTCTCTGCCAGGAAACTTAGGATAGACGATCCTCTTCCTGTGTATAGAACTTTCCCACGCCAACAAATGGCCTTTGAATACGCCAGGACTTGTCACCAGGATGTTTATGTATTTGCAAAGGAAAAGGATCTGCAAGGGAAGCGCATATATCTTGTTGCAACATTGCCAAATTTCTGGTACAATTATACAAGAAACTGTTTGCCAGAAAATAGAAATTACTATGAGGTTATACCAGAAGGTGCTGCTTGTAGGTTGTATTTTGACCTGGAATTCAAAACAGAGTTTAATCCAGACAAGGATGGAACGAAAATGGTTGACATTTTTATAAAGTATGTTTGTTACCAAATAAAGAACATGTATGGCTTGGAGTGTGGTAGAAAGTTTATTGTGGATTTAGATTCAAGCACAGCTTCAAAGTTTTCCAGGCATCTTATATTTCATTTGCCTGGTGCAGTTTTCAAGGATAACATTCATGTTGGGACCTTTGTACGACACATTCTTGCATTGTTGGAAACAAAGGTTGAATATGGATCAGAGCAGCCAGACAGTCAACTTGCAGAAAGAGGTGGAATTTTATGCTGCAATGATAGATCTCCTGCCTTGATTGAAGACAATGCTGAGAAAAGAGTTGATGGAGTTAGACTTGGAGAACTGAAAGAACTCTTTGTCAAGGATGAAAAGGGCAGCTTTTTAATTTTTTGTGACCAAGGTGTCTACACCAAAAATCGTAATTTTAGAATTTTCAAATCGACTAAGATTGGGAAAAAATCCTACCTTGCCTTTTCCAACCAGAACATGTTCAAGCCAAGTCCAAAGGACAGGAAAGGAAGCTTTTCAAAAGACACAGATTACTTGTTTTTTCTGGATTCCTTGGTTTCAAATGTGAGCATGCAAGTTGATGGAAAAGATGTAAGAATCTTAACTTGTGAAAGCTGTGTAAACTCTTGTAAAATACCTCCAAAAAGAACTGCACAAGGAATAGGTAGCCAGGTTCCCACCCAAACTGGCTATGAACATTCTTCTTATCCTGATATTGACCGATTTGTTTTGAGCGTTGTCAACAGAGGTGGTGTCCAGGGAGAGATCAGAAAATGGGTCTATTTTCCTCAAGGCAAACTGCTGACGTACGACATTCTCAAGAATCAGTGGTGTGAGAATATTGGAAGACCACATAAGAGTAACCATATCATGATTGTAGTTGACATAAAGCATGGTGTTTATTACCAGAAGTGTCATGATCCTGACTGTAGGAGGATTGACTATCGTTCTCCAGAAAGACCGATTCCAGAGGATATAGATCCCTTGATGTCTTCTCAGTCCGTCGAGGAGCTTTTCATATCAGATGATGTCGATGATGAGCTTTGCAAAGCTGTAGCAGAGTTTGAGGAAGGTGTCTACGGTAATGTTGACCCGCGTTCAGATGGCACTTCAACTTCGGAAAATCAAGAATGCTCAAACGAAACTAACGTTAAGAAGACCTTTGAAGAAGTGGGAAAGAAAAGATGTTTAGAAATAGGCATTTTTGCAGTGGATGACGAGGAGAGCGATGAAGAATTGGCCAATATCATGGACGATGACCCACGGGTAGAGTCTCATAGCTCAAAGATGCCGAGGGTTGTTGAAAATGGGGAAATCACGTTGGAAGCATGCGAGAAATTTTTGGACACACGGAATATTGTCACTGATGAGCATGCGCTTAATACTGGCTTTGAAGCGATGACCGAAGTTGATGTCCCTCAAGAGAGCTATCTACCTGACAATGCTATCAAACCTTGTTACACGATCAACGTCACTGCAGAGGCCGAAGGAACTAGTACCGAAGCCCTTTTGAATACGCAGGACATTGTCACCAAGGAGCATTCGCATAGCACTGGAAATGCTATTGTTGCAGTGCATTCCGGGGAAGTTAATCCCCAAGAGAGATATCAAGAAGAATTTGAACCTGTTGCCGAGGTGGATAATCTGACAGATGAAGACGCCAGCGTATGGATTGATGAGGACTCTGTTAGTGATTTGGACCTGTCGTTTGCTGCCCAAGAAGTTGAAAATAACAATTTGTGCACAAACTAA

Transcript

chr3Alt.g5710.t1

AGTAATTTCAGTGGATTAAGAGTTTTTCTGGCGATGTGATTGCTTAAATATTTGTTTGACCTATGCGGATCGTAATGAAGAAGAAAAAGAGCAAAGTGCATTAAAGTACAAGATTACCACATAACTGTCTGTCATGGCTGACAGTGACAACAAAGTAAACTCTTTTTATGGAATTGCTCCAAAAAGATATAACAAAAGGTGGGAAGAGAAGAAGATCAAGTTGGAAAAATGTGCCAGGGACTTCAGACAAAATCCAATATTCTCTGCCAGGAAACTTAGGATAGACGATCCTCTTCCTGTGTATAGAACTTTCCCACGCCAACAAATGGCCTTTGAATACGCCAGGACTTGTCACCAGGATGTTTATGTATTTGCAAAGGAAAAGGATCTGCAAGGGAAGCGCATATATCTTGTTGCAACATTGCCAAATTTCTGGTACAATTATACAAGAAACTGTTTGCCAGAAAATAGAAATTACTATGAGGTTATACCAGAAGGTGCTGCTTGTAGGTTGTATTTTGACCTGGAATTCAAAACAGAGTTTAATCCAGACAAGGATGGAACGAAAATGGTTGACATTTTTATAAAGTATGTTTGTTACCAAATAAAGAACATGTATGGCTTGGAGTGTGGTAGAAAGTTTATTGTGGATTTAGATTCAAGCACAGCTTCAAAGTTTTCCAGGCATCTTATATTTCATTTGCCTGGTGCAGTTTTCAAGGATAACATTCATGTTGGGACCTTTGTACGACACATTCTTGCATTGTTGGAAACAAAGGTTGAATATGGATCAGAGCAGCCAGACAGTCAACTTGCAGAAAGAGGTGGAATTTTATGCTGCAATGATAGATCTCCTGCCTTGATTGAAGACAATGCTGAGAAAAGAGTTGATGGAGTTAGACTTGGAGAACTGAAAGAACTCTTTGTCAAGGATGAAAAGGGCAGCTTTTTAATTTTTTGTGACCAAGGTGTCTACACCAAAAATCGTAATTTTAGAATTTTCAAATCGACTAAGATTGGGAAAAAATCCTACCTTGCCTTTTCCAACCAGAACATGTTCAAGCCAAGTCCAAAGGACAGGAAAGGAAGCTTTTCAAAAGACACAGATTACTTGTTTTTTCTGGATTCCTTGGTTTCAAATGTGAGCATGCAAGTTGATGGAAAAGATGTAAGAATCTTAACTTGTGAAAGCTGTGTAAACTCTTGTAAAATACCTCCAAAAAGAACTGCACAAGGAATAGGTAGCCAGGTTCCCACCCAAACTGGCTATGAACATTCTTCTTATCCTGATATTGACCGATTTGTTTTGAGCGTTGTCAACAGAGGTGGTGTCCAGGGAGAGATCAGAAAATGGGTCTATTTTCCTCAAGGCAAACTGCTGACGTACGACATTCTCAAGAATCAGTGGTGTGAGAATATTGGAAGACCACATAAGAGTAACCATATCATGATTGTAGTTGACATAAAGCATGGTGTTTATTACCAGAAGTGTCATGATCCTGACTGTAGGAGGATTGACTATCGTTCTCCAGAAAGACCGATTCCAGAGGATATAGATCCCTTGATGTCTTCTCAGTCCGTCGAGGAGCTTTTCATATCAGATGATGTCGATGATGAGCTTTGCAAAGCTGTAGCAGAGTTTGAGGAAGGTGTCTACGGTAATGTTGACCCGCGTTCAGATGGCACTTCAACTTCGGAAAATCAAGAATGCTCAAACGAAACTAACGTTAAGAAGACCTTTGAAGAAGTGGGAAAGAAAAGATGTTTAGAAATAGGCATTTTTGCAGTGGATGACGAGGAGAGCGATGAAGAATTGGCCAATATCATGGACGATGACCCACGGGTAGAGTCTCATAGCTCAAAGATGCCGAGGGTTGTTGAAAATGGGGAAATCACGTTGGAAGCATGCGAGAAATTTTTGGACACACGGAATATTGTCACTGATGAGCATGCGCTTAATACTGGCTTTGAAGCGATGACCGAAGTTGATGTCCCTCAAGAGAGCTATCTACCTGACAATGCTATCAAACCTTGTTACACGATCAACGTCACTGCAGAGGCCGAAGGAACTAGTACCGAAGCCCTTTTGAATACGCAGGACATTGTCACCAAGGAGCATTCGCATAGCACTGGAAATGCTATTGTTGCAGTGCATTCCGGGGAAGTTAATCCCCAAGAGAGATATCAAGAAGAATTTGAACCTGTTGCCGAGGTGGATAATCTGACAGATGAAGACGCCAGCGTATGGATTGATGAGGACTCTGTTAGTGATTTGGACCTGTCGTTTGCTGCCCAAGAAGTTGAAAATAACAATTTGTGCACAAACTAACTGAAGTGAAAACCTTCCTTTGCAACCTAGCGATATTATTTCAGTTCTTGTAAGAAAAAAGCTGAATTTAGAACTTATTGGCGGTAATAAATTTCACTACATCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96LW4	DNA-directed primase/polymerase protein OS=Homo sapiens OX=9606 GN=PRIMPOL PE=1 SV=3
Q08DZ8	DNA-directed primase/polymerase protein OS=Bos taurus OX=9913 GN=PRIMPOL PE=2 SV=1
A0A3Q2TTB3	DNA-directed primase/polymerase protein OS=Gallus gallus OX=9031 GN=PRIMPOL PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03121 all species →	Herpes_UL52	Herpesviridae UL52/UL70 DNA primase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044917 all species →	Family	DNA-directed primase/polymerase protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31399 all species →	DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0003896 all species →	Molecular Function	DNA primase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006264 all species →	Biological Process	mitochondrial DNA replication	Interproscan
GO:0009411 all species →	Biological Process	response to UV	Interproscan
GO:0019985 all species →	Biological Process	translesion synthesis	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0042276 all species →	Biological Process	error-prone translesion synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22761	PRIMPOL; DNA-directed primase/polymerase protein	EC:2.7.7.102 EC:2.7.7.7	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.