Gene detail

Detailed information of g574.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002162145.1, reticulon-4-interacting protein 1 homolog, mitochondrial [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q0VC50	NAD(P)H oxidoreductase RTN4IP1, mitochondrial OS=Bos taurus OX=9913 GN=RTN4IP1 PE=2 SV=1
Q7T3C7	NAD(P)H oxidoreductase RTN4IP1, mitochondrial OS=Danio rerio OX=7955 GN=rtn4ip1 PE=2 SV=2
Q8WWV3	NAD(P)H oxidoreductase RTN4IP1, mitochondrial OS=Homo sapiens OX=9606 GN=RTN4IP1 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01401	Peptidase_M2	Angiotensin-converting enzyme	Family	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF10174	Cast	RIM-binding protein of the cytomatrix active zone	Coiled-coil	Interproscan
PF04845	PurA	PurA ssDNA and RNA-binding protein	Family	Interproscan
PF12832	MFS_1_like	MFS_1 like family	Family	Interproscan
PF08240	ADH_N	Alcohol dehydrogenase GroES-like domain	Domain	Interproscan
PF13602	ADH_zinc_N_2	Zinc-binding dehydrogenase	Domain	Interproscan
PF05712	MRG	MRG	Family	Interproscan
PF02889	Sec63	Sec63 Brl domain	Family	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04991	LicD	LicD family	Domain	Interproscan
PF09409	PUB	PUB domain	Domain	Interproscan
PF00789	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001548	Family	Peptidase M2, peptidyl-dipeptidase A	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR024855	Family	UNC79	Interproscan
IPR019323	Family	Active zone protein ELKS	Interproscan
IPR006628	Family	Purine-rich element binding protein family	Interproscan
IPR036259	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR051717	Family	Major facilitator superfamily MFSD6	Interproscan
IPR024989	Domain	Major facilitator superfamily associated domain	Interproscan
IPR013154	Domain	Alcohol dehydrogenase-like, N-terminal	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR050700	Family	YIM1 and Zinc-containing Alcohol Dehydrogenase Families	Interproscan
IPR020843	Domain	Polyketide synthase, enoylreductase domain	Interproscan
IPR011032	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR008676	Family	MRG	Interproscan
IPR026541	Domain	MRG domain	Interproscan
IPR038217	Homologous_superfamily	MRG, C-terminal domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR004179	Domain	Sec63 domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR050474	Family	Helicase Hel308/SKI2	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR007074	Family	LicD family	Interproscan
IPR052613	Family	LicD transferase	Interproscan
IPR018997	Domain	PUB domain	Interproscan
IPR001012	Domain	UBX domain	Interproscan
IPR036339	Homologous_superfamily	PUB-like domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10514	ANGIOTENSIN-CONVERTING ENZYME	Interproscan
PTHR21696	UNCHARACTERIZED	Interproscan
PTHR18861	ELKS/RAB6-INTERACTING/CAST PROTEIN	Interproscan
PTHR16172	UNCHARACTERIZED	Interproscan
PTHR11695	ALCOHOL DEHYDROGENASE RELATED	Interproscan
PTHR10880	MORTALITY FACTOR 4-LIKE PROTEIN	Interproscan
PTHR47961	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	Interproscan
PTHR13627	FUKUTIN RELATED PROTEIN	Interproscan
PTHR23153	UBX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0008241	Molecular Function	peptidyl-dipeptidase activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007274	Biological Process	neuromuscular synaptic transmission	Interproscan
GO:0048167	Biological Process	regulation of synaptic plasticity	Interproscan
GO:0048788	Cellular Component	cytoskeleton of presynaptic active zone	Interproscan
GO:0048790	Biological Process	maintenance of presynaptic active zone structure	Interproscan
GO:0098882	Molecular Function	structural constituent of presynaptic active zone	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0032422	Molecular Function	purine-rich negative regulatory element binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0000123	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006325	Biological Process	chromatin organization	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016573	Biological Process	obsolete histone acetylation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14011	UBXN6, UBXD1; UBX domain-containing protein 6	-	Mitochondrial biogenesis	ko03029	deepkoala
K14011	UBXN6, UBXD1; UBX domain-containing protein 6	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala