Gene detail

Detailed information of g578.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_048587243.1, potassium channel subfamily T member 1 isoform X6 [Nematostella vectensis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QFV0	Potassium channel subfamily T member 1 OS=Gallus gallus OX=9031 GN=KCNT1 PE=1 SV=1
Q6ZPR4	Potassium channel subfamily T member 1 OS=Mus musculus OX=10090 GN=Kcnt1 PE=1 SV=2
Q9Z258	Potassium channel subfamily T member 1 OS=Rattus norvegicus OX=10116 GN=Kcnt1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000189 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000559 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001120 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002656 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002850 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003379 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003859 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006738 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008976 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0011766 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0013717 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0019072 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|ZnF\|ZnF_A20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF02010 all species →	REJ	REJ domain	Family	Interproscan
PF03297 all species →	Ribosomal_S25	S25 ribosomal protein	Family	Interproscan
PF01428 all species →	zf-AN1	AN1-like Zinc finger	Family	Interproscan
PF01754 all species →	zf-A20	A20-like zinc finger	Family	Interproscan
PF00188 all species →	CAP	Cysteine-rich secretory protein family	Domain	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF05572 all species →	Peptidase_M43	Pregnancy-associated plasma protein-A	Family	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00617 all species →	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR002859 all species →	Domain	PKD/REJ-like domain	Interproscan
IPR047871 all species →	Family	Calcium-activated potassium channel slowpoke-like	Interproscan
IPR004977 all species →	Family	Small ribosomal subunit protein eS25	Interproscan
IPR000058 all species →	Domain	Zinc finger, AN1-type	Interproscan
IPR002653 all species →	Domain	Zinc finger, A20-type	Interproscan
IPR050652 all species →	Family	AN1/A20 Zinc Finger	Interproscan
IPR035896 all species →	Homologous_superfamily	AN1-like Zinc finger	Interproscan
IPR014044 all species →	Domain	CAP domain	Interproscan
IPR035940 all species →	Homologous_superfamily	CAP superfamily	Interproscan
IPR001283 all species →	Family	Cysteine-rich secretory protein-related	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR006558 all species →	Domain	LamG-like jellyroll fold	Interproscan
IPR008754 all species →	Domain	Peptidase M43, pregnancy-associated plasma-A	Interproscan
IPR043543 all species →	Family	Pappalysin-1/2	Interproscan
IPR019804 all species →	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR008937 all species →	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR001895 all species →	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036964 all species →	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR023578 all species →	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46730 all species →	POLYCYSTIN-1	Interproscan
PTHR10027 all species →	CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN	Interproscan
PTHR12850 all species →	40S RIBOSOMAL PROTEIN S25	Interproscan
PTHR10634 all species →	AN1-TYPE ZINC FINGER PROTEIN	Interproscan
PTHR10334 all species →	CYSTEINE-RICH SECRETORY PROTEIN-RELATED	Interproscan
PTHR46130 all species →	LAMGL DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR23113 all species →	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan
GO:0005228 all species →	Molecular Function	intracellular sodium-activated potassium channel activity	Interproscan
GO:0005267 all species →	Molecular Function	potassium channel activity	Interproscan
GO:0015271 all species →	Molecular Function	outward rectifier potassium channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02975	RP-S25e, RPS25; small subunit ribosomal protein S25e	-	Ribosome	ko03011	deepkoala
K24687	ZFAND5_6; AN1-type zinc finger protein 5/6	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →