Gene detail

Detailed information of g5793.t2 in Tripedalia maipoensis

Genomic Location: scaffold_2:42885686...42901710
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g5793.t2

ATGGTGTTCAATGCTGAAATGCATGCTCCGAAAAATGGTCAGAAGTCCTTTGAGTTTGAAGTTCGATCTGTAACTAAACTTTCACGGGAAGAATGGACTGCTAAATTGCGACAGAATGGTGTATTTGACTCGGTCTCGGGCAGGAATCCTTCTGTTTTGTCCGGAGATAAAACAAGGCCTGGCGGTCACAGAAGACCTGTCACAGTTATACCTTGCTTCCCTCTTACTGTGATAACTACCGGGAAAAGAAATGACTACGTAGTGGATAGCATTGTATTACAAGATATACCAGGTGCTCAGAAGCGATGGCGAAACCCCATGAAGAAATCTCCTATTATCAATTGGGCAATGAACAAGAAAGGAGGGAAAGGAAACGTGTCGCAAGAAATAATTTCGCCTGGAAAGCTATTTGGACTATCATTAACGGCTCTCACTACTAATGAAGAACTGGTACCCAAGCCTATTGAGGACATCTTACTTCAGCTCTTCAGGAAGGGTCCATCAACAGTCGGAATTTTTAGAAAATCGGGGCTAATGAAAAGTATGAAGCAAGTTCGGCAAGCATTGAATGAAGGTGCTGCGGTAGAACTGGAAGACAAGCCTGCTGTGTTGCTGTCAACAATCCTCAAGGAATTTTTCCGGTCCCTTCCTGACTGCATCTTCGGAAGTGATTTTTATGACGAATTCGTAGCGTCCAAAGAGATATCAGATGCCACTGCCCGAGCGGAAGAAATCAAAAAGATCTTGAACAAACTGCCAAAGCCCAATCAAGAGCTTATCAAGAGGTTTCTCTGCTTAGCCTTCTACATCGCTAAATATTCGGAGAGAAACAGCATGACTGCATCAAATTTGGCCGTTTGTATTGCGCCCAGTCTAATATGGCCTCCAGGTCAAGAGAAGCTGATGTCGCCGGAGACGACTACCAACGCAGCAGAATTTGTTTGCTTTGTAATCGAAAATTTTGTCGGTATCTACGGCGAGGAAGCTCTAGGGTTGTTGGGTCGCGAGTCTGAAATTTGTCTGGATGCTGCTCCTGTTCCTGAAGAAGACCCAGAAACCGTCGGAGATCCAATAATATTTCATTGTGTACAAGGAGATACAGACACCGAAAGATCAATGAGACCCGCTGATCTGCGAACTTCGTTTTCATTTGGAGGGCCCAAGGAGGAAAACGAAGACGGCTCAGAAGAACGGTTAAACCTGAGCAATTCCCTCAATCTTACCTCTGGCAATCTCTTTCCTGGAAAAGTAAGGGACTCTAAGAGCAGTCCTTCTTCACCTTTACCTTCTCGAAGACGGTCTCCGCCGACTGCAAAGCAAAGATTGGATGATTTGAAACGATTGGAAAATGGTTTTATTGATAATCGAGTTACCATCCGACGATACTCGGACCAGGATATTAAGGAGTCTGAAGCTCGAGATTTACCTAAATATACGAGGGTTAAGCGTACATTGATCAGCACTACAACTAGTGCTGAGCTCATAGAACACAAGAGACCTTCTCTAAATGGCTTCACTCCACGAATGGGACAGAGGGACCATAATAATGGAAATAGTTCGCCTCAGACTGTAAGAGTCATGTCACCTTCCAACACGTCACCTCGGGGTCAAAGTAGAAGAGCCAACCATTCAAATGGGTCCATAGGTATTCAGGCTCAGCAGCACGGCCATAGTGACTATGTTGACTCCGCTTTCGAATCGCCTGATATCTCAATAACGCCTAATGCATCCCCAAGGGGATTCTCTGGAGGAAGTAATCAGGGATCTGAAACAAGTTCCTCAGACGGTGGACGCTGTAGCCCGCATAGGTCACCACTTTCCTCCCCTATGCTGCGCAAGAAGTTTCAGTTTTCAGAAGGACGCCCTACACAAGCCGATATAGTTATGCAGAATTTCTACCGTCGTCAGCAGCCGGCTGCACCTTCGTACGATGAACATATTCAACGCCGGCAGCTTTGGCATCGCCAGGGTGCTTCGCAACGGTTAGGTAGCGACTCGGACAATGAAAGAGCAGCTTCTGGACGCGCAGATGATGTGCACGATGCAGGAAGTGTCTCCAGAAAATTAGACAAGGGCTTACACGTCAGTGAATTAGACGATACTAAAACCACAAGGCAAGTAAGGTCGAAGGATGTTGCTGATGTTCAGCCCTCTGCTTTTACGTTTGGGCGGCCTTGTTTCGCGGATCGGGAAATGGTTCGTTCGCAGCCAAACATGGAGCACAAGAGTTACCTTAATGTGGAAAAAGACACCTCCCCCTTATACAAGCATAGTCCACGTTTGGTCCATCGCCGTCTTGATATTGATACTAAAAACTTCTCCGAGAGCAGCATTTATTCGCGGGTATCTGGAGAACACTTCCGCACGCCAGGATATTCACCGGGCCGCACATTTTTTGGATCGCAGGTTGACAGCCAGCCGAAAAACGAGCCAAGTCATGCTAGTGGAAATTCTGGCCTTTATGTCGGAATACCAGTTAAGTCAAACTACTCACATTTCCCCGCGACGGACTTTTTTCCTCCGGAGGCGAAAGTAAACTTTAAATCATCAGGAGGTTTTAACCAGAACCCTTGGGCAAAGGAAGAAGCCAGAAAACACGCGAGGAAGGACATGGATGATGCGTTGGACAGCCGCAGCCAGGCGGGCAGTGGCAATACGTCGACGCAAATAGATGAGCTTGGTTCCATCAGACGTGATGTAACTACGAGCGATTTACCGACGCTAGATGTTAGTGTACCGGTAATCCCTCATTTGTCCGATTTAGAAACACCAACGCTGGAAGATTTCCAGAATTTTATGTTTCAGGATGAATCACGAGTGTAA

Transcript

g5793.t2

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001712 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23179 all species →	T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20641	ARHGAP20; Rho GTPase-activating protein 20	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.