Detailed information of g581.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_027043302.1, RNA-binding protein 28-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8CGC6RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4
Q9NW13RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3
P37838Nucleolar protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NOP4 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00168C2C2 domainDomainInterproscan
PF08150FerBFerB (NUC096) domainDomainInterproscan
PF13499EF-hand_7EF-hand domain pairDomainInterproscan
PF00640PIDPhosphotyrosine interaction domain (PTB/PID)DomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00557Peptidase_M24Metallopeptidase family M24DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR037724DomainFerlin, fifth C2 domainInterproscan
IPR037723DomainFerlin, fourth C2 domainInterproscan
IPR012561DomainFerlin B-domainInterproscan
IPR037722DomainFerlin, third C2 domainInterproscan
IPR000008DomainC2 domainInterproscan
IPR037721FamilyFerlin familyInterproscan
IPR037725DomainFerlin, sixth C2 domainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR006020DomainPTB/PI domainInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR051133FamilyAdapter and Engulfment Domain-Containing ProteinInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR051945FamilyRRM MRD1 RNA Processing and Ribosome BiogenesisInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR052035FamilyZinc finger BED domain-containingInterproscan
IPR001714FamilyPeptidase M24, methionine aminopeptidaseInterproscan
IPR002467FamilyPeptidase M24A, methionine aminopeptidase, subfamily 1Interproscan
IPR036005Homologous_superfamilyCreatinase/aminopeptidase-likeInterproscan
IPR000994DomainPeptidase M24Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12546FER-1-LIKEInterproscan
PTHR11232PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBERInterproscan
PTHR48039RNA-BINDING MOTIF PROTEIN 14BInterproscan
PTHR46481ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4Interproscan
PTHR43330METHIONINE AMINOPEPTIDASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016020Cellular ComponentmembraneInterproscan
GO:0007009Biological Processplasma membrane organizationInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0050998Molecular Functionnitric-oxide synthase bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0070006Molecular Functionmetalloaminopeptidase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0035551Biological Processobsolete protein initiator methionine removal involved in protein maturationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01265map; methionyl aminopeptidaseEC:3.4.11.18
Ribosome biogenesisko03009deepkoala
Peptidases and inhibitorsko01002deepkoala

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