Gene detail

Detailed information of g590.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_046650692.1, uncharacterized protein LOC124341793 [Daphnia pulicaria]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P24347	Stromelysin-3 OS=Homo sapiens OX=9606 GN=MMP11 PE=1 SV=3
Q02853	Stromelysin-3 OS=Mus musculus OX=10090 GN=Mmp11 PE=1 SV=2
P23097	Collagenase 3 (Fragment) OS=Rattus norvegicus OX=10116 GN=Mmp13 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00206	Lyase_1	Lyase	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13833	EF-hand_8	EF-hand domain pair	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00171	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF00413	Peptidase_M10	Matrixin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008948	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR022761	Domain	Fumarate lyase, N-terminal	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR020557	Conserved_site	Fumarate lyase, conserved site	Interproscan
IPR009049	Family	Argininosuccinate lyase	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR029510	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan
IPR012394	Family	Aldehyde dehydrogenase NAD(P)-dependent	Interproscan
IPR016162	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR015590	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016163	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR024079	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR001818	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR006026	Domain	Peptidase, metallopeptidase	Interproscan
IPR033739	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR021190	Family	Peptidase M10A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43814	ARGININOSUCCINATE LYASE	Interproscan
PTHR10827	RETICULOCALBIN	Interproscan
PTHR43570	ALDEHYDE DEHYDROGENASE	Interproscan
PTHR13318	UNCHARACTERIZED	Interproscan
PTHR10201	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004056	Molecular Function	argininosuccinate lyase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0042450	Biological Process	arginine biosynthetic process via ornithine	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0004029	Molecular Function	aldehyde dehydrogenase (NAD+) activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006081	Biological Process	aldehyde metabolic process	Interproscan
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008237	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0030574	Biological Process	collagen catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala