Gene detail

Detailed information of g594.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_013389850.1, condensin complex subunit 3-like [Lingula anatina]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BPX3	Condensin complex subunit 3 OS=Homo sapiens OX=9606 GN=NCAPG PE=1 SV=1
Q9YHB5	Condensin complex subunit 3 OS=Xenopus laevis OX=8355 GN=ncapg PE=1 SV=1
Q10429	Condensin complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cnd3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000534 (this species only)
Orthogroup (gene family)	OG0002149 (this species only)
Orthogroup (gene family)	OG0002279 (this species only)
Orthogroup (gene family)	OG0004586 (this species only)
Orthogroup (gene family)	OG0006702 (this species only)
Orthogroup (gene family)	OG0007432 (this species only)
Orthogroup (gene family)	OG0008837 (this species only)
Orthogroup (gene family)	OG0016181 (this species only)
Orthogroup (gene family)	OG0018201 (this species only)
Orthogroup (gene family)	OG0018998 (this species only)
Orthogroup (gene family)	OG0022267 (this species only)
Orthogroup (gene family)	OG0025846 (this species only)
Orthogroup (gene family)	OG0041251 (this species only)
Orthogroup (gene family)	OG0170982 (this species only)
Orthogroup (gene family)	OG0173632 (this species only)
Transcription factor family	ARID · all TF in this species
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00068 all species →	Phospholip_A2_1	Phospholipase A2	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF04103 all species →	CD20	CD20-like family	Family	Interproscan
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan
PF10545 all species →	MADF_DNA_bdg	Alcohol dehydrogenase transcription factor Myb/SANT-like	Domain	Interproscan
PF12719 all species →	Cnd3	Nuclear condensing complex subunits, C-term domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016090 all species →	Domain	Phospholipase A2 domain	Interproscan
IPR033113 all species →	Active_site	Phospholipase A2, histidine active site	Interproscan
IPR036444 all species →	Homologous_superfamily	Phospholipase A2 domain superfamily	Interproscan
IPR001211 all species →	Family	Phospholipase A2	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050505 all species →	Family	WD repeat-containing protein WDR55/POC1	Interproscan
IPR007237 all species →	Family	CD20-like family	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR045147 all species →	Family	AT-rich interactive domain-containing protein 3	Interproscan
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR052320 all species →	Family	Cytochrome b5 domain-containing	Interproscan
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR006578 all species →	Domain	MADF domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR025977 all species →	Domain	Nuclear condensin complex subunit 3, C-terminal domain	Interproscan
IPR027165 all species →	Family	Condensin complex subunit 3	Interproscan
IPR027272 all species →	Family	Piezo family	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11716 all species →	PHOSPHOLIPASE A2 FAMILY MEMBER	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR44019 all species →	WD REPEAT-CONTAINING PROTEIN 55	Interproscan
PTHR39952 all species →	FI02073P	Interproscan
PTHR15348 all species →	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT	Interproscan
PTHR21281 all species →	UNCHARACTERIZED	Interproscan
PTHR14418 all species →	CONDENSIN COMPLEX SUBUNIT 3-RELATED	Interproscan
PTHR47049 all species →	PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004623 all species →	Molecular Function	phospholipase A2 activity	Interproscan
GO:0006644 all species →	Biological Process	phospholipid metabolic process	Interproscan
GO:0050482 all species →	Biological Process	arachidonate secretion	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0000793 all species →	Cellular Component	condensed chromosome	Interproscan
GO:0000796 all species →	Cellular Component	condensin complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007076 all species →	Biological Process	mitotic chromosome condensation	Interproscan
GO:0008381 all species →	Molecular Function	mechanosensitive monoatomic ion channel activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01047	PLA2G, SPLA2; secretory phospholipase A2	EC:3.1.1.4	Chromosome and associated proteins	ko03036	deepkoala
K06678	YCG1, CAPG; condensin complex subunit 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.