Gene detail

Detailed information of g596.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_020632049.1, cytochrome P450 27C1-like [Orbicella faveolata]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09128	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Rattus norvegicus OX=10116 GN=Cyp24a1 PE=1 SV=1
Q02318	Sterol 26-hydroxylase, mitochondrial OS=Homo sapiens OX=9606 GN=CYP27A1 PE=1 SV=1
Q64441	1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Mus musculus OX=10090 GN=Cyp24a1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000329 (this species only)
Orthogroup (gene family)	OG0000590 (this species only)
Orthogroup (gene family)	OG0000706 (this species only)
Orthogroup (gene family)	OG0001155 (this species only)
Orthogroup (gene family)	OG0001643 (this species only)
Orthogroup (gene family)	OG0001985 (this species only)
Orthogroup (gene family)	OG0002147 (this species only)
Orthogroup (gene family)	OG0004230 (this species only)
Orthogroup (gene family)	OG0005847 (this species only)
Orthogroup (gene family)	OG0009649 (this species only)
Orthogroup (gene family)	OG0172199 (this species only)
Orthogroup (gene family)	OG0172946 (this species only)
Orthogroup (gene family)	OG0173342 (this species only)
Orthogroup (gene family)	OG0173625 (this species only)
Transcription factor family	Nrf1 · all TF in this species
Transcription factor family	zf-LITAF-like · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10601 all species →	zf-LITAF-like	LITAF-like zinc ribbon domain	Family	Interproscan
PF01163 all species →	RIO1	RIO1 family	Family	Interproscan
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan
PF00549 all species →	Ligase_CoA	CoA-ligase	Domain	Interproscan
PF08442 all species →	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan
PF10491 all species →	Nrf1_DNA-bind	NLS-binding and DNA-binding and dimerisation domains of Nrf1	Family	Interproscan
PF10492 all species →	Nrf1_activ_bdg	Nrf1 activator activation site binding domain	Domain	Interproscan
PF00180 all species →	Iso_dh	Isocitrate/isopropylmalate dehydrogenase	Domain	Interproscan
PF00462 all species →	Glutaredoxin	Glutaredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006629 all species →	Domain	LPS-induced tumour necrosis factor alpha factor	Interproscan
IPR037519 all species →	Family	LITAF domain containing protein	Interproscan
IPR017407 all species →	Family	Serine/threonine-protein kinase Rio1	Interproscan
IPR018935 all species →	Conserved_site	RIO kinase, conserved site	Interproscan
IPR051272 all species →	Family	RIO-type Ser/Thr kinase	Interproscan
IPR000687 all species →	Domain	RIO kinase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR050479 all species →	Family	Cytochrome P450, families 11 and 27	Interproscan
IPR005809 all species →	Family	Succinate--CoA ligase-like, beta subunit	Interproscan
IPR034723 all species →	Family	Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR016102 all species →	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR005811 all species →	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR017866 all species →	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR013650 all species →	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019525 all species →	Domain	Nuclear respiratory factor 1, NLS/DNA-binding, dimerisation domain	Interproscan
IPR039142 all species →	Family	NRF1/Ewg family	Interproscan
IPR024084 all species →	Domain	Isopropylmalate dehydrogenase-like domain	Interproscan
IPR019818 all species →	Conserved_site	Isocitrate/isopropylmalate dehydrogenase, conserved site	Interproscan
IPR004434 all species →	Family	Isocitrate dehydrogenase NAD-dependent	Interproscan
IPR011899 all species →	Domain	Glutaredoxin, eukaryotic/virial	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR002109 all species →	Domain	Glutaredoxin	Interproscan
IPR014025 all species →	Domain	Glutaredoxin subgroup	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23292 all species →	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	Interproscan
PTHR45723 all species →	SERINE/THREONINE-PROTEIN KINASE RIO1	Interproscan
PTHR24279 all species →	-	Interproscan
PTHR11815 all species →	SUCCINYL-COA SYNTHETASE BETA CHAIN	Interproscan
PTHR47969 all species →	CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED	Interproscan
PTHR20338 all species →	NUCLEAR RESPIRATORY FACTOR 1	Interproscan
PTHR11835 all species →	DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE	Interproscan
PTHR45694 all species →	GLUTAREDOXIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006700 all species →	Biological Process	C21-steroid hormone biosynthetic process	Interproscan
GO:0006704 all species →	Biological Process	glucocorticoid biosynthetic process	Interproscan
GO:0008203 all species →	Biological Process	cholesterol metabolic process	Interproscan
GO:0034650 all species →	Biological Process	cortisol metabolic process	Interproscan
GO:0071375 all species →	Biological Process	cellular response to peptide hormone stimulus	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0004775 all species →	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0006104 all species →	Biological Process	succinyl-CoA metabolic process	Interproscan
GO:0042709 all species →	Cellular Component	succinate-CoA ligase complex	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005875 all species →	Cellular Component	microtubule associated complex	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0051231 all species →	Biological Process	spindle elongation	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006102 all species →	Biological Process	isocitrate metabolic process	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0015038 all species →	Molecular Function	glutathione disulfide oxidoreductase activity	Interproscan
GO:0034599 all species →	Biological Process	cellular response to oxidative stress	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00030	IDH3; isocitrate dehydrogenase (NAD+)	EC:1.1.1.41	Citrate cycle (TCA cycle)	ko00020	deepkoala
K01900	LSC2; succinyl-CoA synthetase beta subunit	EC:6.2.1.4 EC:6.2.1.5	Exosome	ko04147	deepkoala
K03676	grxC, GLRX, GLRX2; glutaredoxin 3	-	Chaperones and folding catalysts	ko03110	deepkoala
K07178	RIOK1; RIO kinase 1	EC:2.7.11.1	Ribosome biogenesis	ko03009	deepkoala
K11498	CENPE, KIF10; centromeric protein E	-	Chromosome and associated proteins	ko03036	deepkoala
K11831	NRF1; nuclear respiratory factor 1	-	Mitochondrial biogenesis	ko03029	deepkoala
K18740	EXD1, EGL; exonuclease 3'-5' domain-containing protein 1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.