Gene detail

Detailed information of g597.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047129013.1, charged multivesicular body protein 7 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XTS1	Calcium-independent phospholipase A2-gamma OS=Oryctolagus cuniculus OX=9986 GN=PNPLA8 PE=1 SV=1
Q9NP80	Calcium-independent phospholipase A2-gamma OS=Homo sapiens OX=9606 GN=PNPLA8 PE=1 SV=1
Q8K1N1	Calcium-independent phospholipase A2-gamma OS=Mus musculus OX=10090 GN=Pnpla8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000077 (this species only)
Orthogroup (gene family)	OG0003553 (this species only)
Orthogroup (gene family)	OG0005157 (this species only)
Orthogroup (gene family)	OG0005612 (this species only)
Orthogroup (gene family)	OG0006191 (this species only)
Orthogroup (gene family)	OG0006693 (this species only)
Orthogroup (gene family)	OG0007123 (this species only)
Orthogroup (gene family)	OG0019890 (this species only)
Orthogroup (gene family)	OG0020554 (this species only)
Orthogroup (gene family)	OG0021357 (this species only)
Orthogroup (gene family)	OG0025847 (this species only)
Orthogroup (gene family)	OG0036254 (this species only)
Orthogroup (gene family)	OG0057167 (this species only)
Orthogroup (gene family)	OG0171153 (this species only)
Orthogroup (gene family)	OG0171644 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03357 all species →	Snf7	Snf7	Family	Interproscan
PF01399 all species →	PCI	PCI domain	Domain	Interproscan
PF18503 all species →	RPN6_C_helix	26S proteasome subunit RPN6 C-terminal helix domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00814 all species →	TsaD	tRNA N6-adenosine threonylcarbamoyltransferase	Family	Interproscan
PF05026 all species →	DCP2	Dcp2, box A domain	Domain	Interproscan
PF01734 all species →	Patatin	Patatin-like phospholipase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005024 all species →	Family	Snf7 family	Interproscan
IPR050871 all species →	Family	26S Proteasome and COP9 Signalosome Components	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR040780 all species →	Domain	6S proteasome subunit Rpn6, C-terminal helix domain	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR042507 all species →	Family	TBC1 domain family member 19	Interproscan
IPR003410 all species →	Domain	HYR domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR034680 all species →	Family	tRNA N6-adenosine threonylcarbamoyltransferase Kae1, archaeal/eukaryotic	Interproscan
IPR000905 all species →	Domain	Gcp-like domain	Interproscan
IPR017861 all species →	Family	Kae1/TsaD family	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR017860 all species →	Conserved_site	Peptidase M22, conserved site	Interproscan
IPR036189 all species →	Homologous_superfamily	mRNA decapping protein 2, Box A domain superfamily	Interproscan
IPR007722 all species →	Domain	mRNA decapping protein 2, Box A domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR002641 all species →	Domain	Patatin-like phospholipase domain	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR045217 all species →	Domain	Patatin-like phospholipase domain containing protein 8-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10678 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2	Interproscan
PTHR16110 all species →	TBC1 DOMAIN FAMILY MEMBER 19	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11735 all species →	TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE	Interproscan
PTHR23114 all species →	M7GPPPN-MRNA HYDROLASE	Interproscan
PTHR24185 all species →	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2-GAMMA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008541 all species →	Cellular Component	proteasome regulatory particle, lid subcomplex	Interproscan
GO:0000408 all species →	Cellular Component	EKC/KEOPS complex	Interproscan
GO:0002949 all species →	Biological Process	tRNA threonylcarbamoyladenosine modification	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0000290 all species →	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0050072 all species →	Molecular Function	obsolete m7G(5')pppN diphosphatase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019369 all species →	Biological Process	arachidonate metabolic process	Interproscan
GO:0047499 all species →	Molecular Function	calcium-independent phospholipase A2 activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01409	OSGEP, KAE1, QRI7; N6-L-threonylcarbamoyladenine synthase	EC:2.3.1.234	Transfer RNA biogenesis	ko03016	deepkoala
K15053	CHMP7; charged multivesicular body protein 7	-	Exosome	ko04147	deepkoala
K16815	PNPLA8; calcium-independent phospholipase A2-gamma	-	Lipid metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.