Gene detail

Detailed information of g5986.t1 in Acropora digitifera

Genomic Location: chr3Alt:10575769...10578333
NR annotation: XP_015758506.1, PREDICTED: uncharacterized protein LOC107337784 [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00965 all species →	TIMP	Tissue inhibitor of metalloproteinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001820 all species →	Family	Protease inhibitor I35 (TIMP)	Interproscan
IPR008993 all species →	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR027465 all species →	Homologous_superfamily	Proteinase inhibitor I35b (TIMP), C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11844 all species →	METALLOPROTEASE INHIBITOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008191 all species →	Molecular Function	metalloendopeptidase inhibitor activity	Interproscan
GO:0002020 all species →	Molecular Function	protease binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0010033 all species →	Biological Process	obsolete response to organic substance	Interproscan
GO:0010951 all species →	Biological Process	negative regulation of endopeptidase activity	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0051045 all species →	Biological Process	negative regulation of membrane protein ectodomain proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g5986.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g5986.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

199.3Max TPM

81.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	81.93	199.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	199.31
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	183.68
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	134.77
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	126.20
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	125.03
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	121.34
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	120.08
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	117.72
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	117.39
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	117.33
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	99.11
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	94.95
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	94.58
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	86.98
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	83.76
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	76.75
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	75.45
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	75.23
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	72.83
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	71.62
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	69.21
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	67.97
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	67.02
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	66.43
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	65.15
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	60.46
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	59.09
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	58.93
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	55.09
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	52.93
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	49.27
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	46.03
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	43.77
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	43.39
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	43.29
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	42.60
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	42.08
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	38.81
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	29.78

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.