Gene detail

Detailed information of g6.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_115935269.1, acetolactate synthase 3 large subunit [Aestuariispira insulae]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00893	Acetolactate synthase isozyme 3 large subunit OS=Escherichia coli (strain K12) OX=83333 GN=ilvI PE=1 SV=2
P45261	Acetolactate synthase large subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=ilvI PE=3 SV=1
Q89AP7	Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=ilvI PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000592 (this species only)
Orthogroup (gene family)	OG0000658 (this species only)
Orthogroup (gene family)	OG0001267 (this species only)
Orthogroup (gene family)	OG0003339 (this species only)
Orthogroup (gene family)	OG0004389 (this species only)
Orthogroup (gene family)	OG0006006 (this species only)
Orthogroup (gene family)	OG0010819 (this species only)
Orthogroup (gene family)	OG0021051 (this species only)
Orthogroup (gene family)	OG0036224 (this species only)
Orthogroup (gene family)	OG0036233 (this species only)
Orthogroup (gene family)	OG0080622 (this species only)
Orthogroup (gene family)	OG0171098 (this species only)
Orthogroup (gene family)	OG0173190 (this species only)
Orthogroup (gene family)	OG0173271 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00248 all species →	Aldo_ket_red	Aldo/keto reductase family	Domain	Interproscan
PF00638 all species →	Ran_BP1	RanBP1 domain	Domain	Interproscan
PF00205 all species →	TPP_enzyme_M	Thiamine pyrophosphate enzyme, central domain	Domain	Interproscan
PF02776 all species →	TPP_enzyme_N	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	Domain	Interproscan
PF02775 all species →	TPP_enzyme_C	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	Domain	Interproscan
PF02574 all species →	S-methyl_trans	Homocysteine S-methyltransferase	Family	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF20499 all species →	DUF6729	Domain of unknown function (DUF6729)	Domain	Interproscan
PF06294 all species →	CH_2	CH-like domain in sperm protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020471 all species →	Family	Aldo-keto reductase	Interproscan
IPR036812 all species →	Homologous_superfamily	NADP-dependent oxidoreductase domain superfamily	Interproscan
IPR023210 all species →	Domain	NADP-dependent oxidoreductase domain	Interproscan
IPR018170 all species →	Conserved_site	Aldo/keto reductase, conserved site	Interproscan
IPR000156 all species →	Domain	Ran binding domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR045255 all species →	Family	Ran binding protein RanBP1-like	Interproscan
IPR012000 all species →	Domain	Thiamine pyrophosphate enzyme, central domain	Interproscan
IPR012001 all species →	Domain	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR011766 all species →	Domain	Thiamine pyrophosphate enzyme, TPP-binding	Interproscan
IPR012846 all species →	Family	Acetolactate synthase, large subunit, biosynthetic	Interproscan
IPR000399 all species →	Conserved_site	TPP-binding enzyme, conserved site	Interproscan
IPR029035 all species →	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR045229 all species →	Family	Thiamine pyrophosphate enzyme	Interproscan
IPR039368 all species →	Domain	Acetolactate synthase large subunit, TPP binding domain	Interproscan
IPR036589 all species →	Homologous_superfamily	Homocysteine-binding domain superfamily	Interproscan
IPR050554 all species →	Family	Methionine Synthase/Corrinoid	Interproscan
IPR003726 all species →	Domain	Homocysteine-binding domain	Interproscan
IPR017226 all species →	Family	Betaine-homocysteine S-methyltransferase, BHMT	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR046616 all species →	Domain	Domain of unknown function DUF6729	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR039037 all species →	Family	Calcium homeostasis endoplasmic reticulum protein	Interproscan
IPR052111 all species →	Family	Spermatogenesis and Ciliary Microtubule-associated Protein	Interproscan
IPR010441 all species →	Domain	CH-like domain in sperm protein	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43827 all species →	2,5-DIKETO-D-GLUCONIC ACID REDUCTASE	Interproscan
PTHR23138 all species →	RAN BINDING PROTEIN	Interproscan
PTHR18968 all species →	THIAMINE PYROPHOSPHATE ENZYMES	Interproscan
PTHR45833 all species →	METHIONINE SYNTHASE	Interproscan
PTHR12011 all species →	ADHESION G-PROTEIN COUPLED RECEPTOR	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR24401 all species →	SI:CH211-243P7.3-RELATED	Interproscan
PTHR12323 all species →	SR-RELATED CTD ASSOCIATED FACTOR 6	Interproscan
PTHR12509 all species →	SPERMATOGENESIS-ASSOCIATED 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0003984 all species →	Molecular Function	acetolactate synthase activity	Interproscan
GO:0009082 all species →	Biological Process	branched-chain amino acid biosynthetic process	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005948 all species →	Cellular Component	acetolactate synthase complex	Interproscan
GO:0009097 all species →	Biological Process	isoleucine biosynthetic process	Interproscan
GO:0009099 all species →	Biological Process	L-valine biosynthetic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008705 all species →	Molecular Function	methionine synthase activity	Interproscan
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006874 all species →	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0051493 all species →	Biological Process	regulation of cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00548	metH, MTR; 5-methyltetrahydrofolate--homocysteine methyltransferase	EC:2.1.1.13	Cobalamin transport and metabolism	ko04980	deepkoala
K01652	E2.2.1.6L, ilvB, ilvG, ilvI; acetolactate synthase I/II/III large subunit	EC:2.2.1.6	Pantothenate and CoA biosynthesis	ko00770	deepkoala
K25616	SPATA4; spermatogenesis-associated protein 4	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.