Detailed information of g601.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: APW77283.1, SoxE1 [Hydractinia echinata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P57073Transcription factor SOX-8 OS=Homo sapiens OX=9606 GN=SOX8 PE=1 SV=1
Q6VVD7Transcription factor Sox-8 OS=Xenopus laevis OX=8355 GN=sox8 PE=2 SV=1
Q04886Transcription factor SOX-8 OS=Mus musculus OX=10090 GN=Sox8 PE=2 SV=2
Gene familySubfamily
Transcription Factors FamilyHMG

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04139Rad9Rad9FamilyInterproscan
PF13307Helicase_C_2Helicase C-terminal domainDomainInterproscan
PF00620RhoGAPRhoGAP domainDomainInterproscan
PF00130C1_1Phorbol esters/diacylglycerol binding domain (C1 domain)DomainInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF01094ANF_receptorReceptor family ligand binding regionFamilyInterproscan
PF000037tm_37 transmembrane sweet-taste receptor of 3 GCPRDomainInterproscan
PF00102Y_phosphataseProtein-tyrosine phosphataseDomainInterproscan
PF07727RVT_2Reverse transcriptase (RNA-dependent DNA polymerase)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR026584FamilyRad9Interproscan
IPR007268FamilyRad9/Ddc1Interproscan
IPR046938Homologous_superfamilyDNA clamp superfamilyInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR006555DomainATP-dependent helicase, C-terminalInterproscan
IPR045028FamilyHelicase superfamily 1/2, DinG/Rad3-likeInterproscan
IPR000198DomainRho GTPase-activating protein domainInterproscan
IPR008936Homologous_superfamilyRho GTPase activation proteinInterproscan
IPR046349Homologous_superfamilyC1-like domain superfamilyInterproscan
IPR002219DomainProtein kinase C-like, phorbol ester/diacylglycerol-binding domainInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR050140FamilySRY-related HMG-box transcription factorsInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR000337FamilyGPCR, family 3Interproscan
IPR038550Homologous_superfamilyGPCR, family 3, nine cysteines domain superfamilyInterproscan
IPR017978DomainGPCR family 3, C-terminalInterproscan
IPR001828DomainReceptor, ligand binding regionInterproscan
IPR028082Homologous_superfamilyPeriplasmic binding protein-like IInterproscan
IPR050726FamilyMetabotropic Glutamate ReceptorInterproscan
IPR000242DomainTyrosine-specific protein phosphatase, PTPase domainInterproscan
IPR029021Homologous_superfamilyProtein-tyrosine phosphatase-likeInterproscan
IPR050348FamilyProtein-Tyrosine PhosphataseInterproscan
IPR013103DomainReverse transcriptase, RNA-dependent DNA polymeraseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15237DNA REPAIR PROTEIN RAD9Interproscan
PTHR31511PROTEIN CBG23764Interproscan
PTHR46361ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASEInterproscan
PTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERInterproscan
PTHR46199RAC GTPASE-ACTIVATING PROTEIN 1Interproscan
PTHR10270SOX TRANSCRIPTION FACTORInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR24060METABOTROPIC GLUTAMATE RECEPTORInterproscan
PTHR19134RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000077Biological ProcessDNA damage checkpoint signalingInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0030896Cellular Componentcheckpoint clamp complexInterproscan
GO:0000076Biological ProcessDNA replication checkpoint signalingInterproscan
GO:0031573Biological Processmitotic intra-S DNA damage checkpoint signalingInterproscan
GO:0071479Biological Processcellular response to ionizing radiationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004386Molecular Functionhelicase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006139Biological Processnucleobase-containing compound metabolic processInterproscan
GO:0016818Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006289Biological Processnucleotide-excision repairInterproscan
GO:1990918Biological Processdouble-strand break repair involved in meiotic recombinationInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0000281Biological Processmitotic cytokinesisInterproscan
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0007266Biological ProcessRho protein signal transductionInterproscan
GO:0030496Cellular ComponentmidbodyInterproscan
GO:0032154Cellular Componentcleavage furrowInterproscan
GO:0051233Cellular Componentspindle midzoneInterproscan
GO:0051256Biological Processmitotic spindle midzone assemblyInterproscan
GO:0097149Cellular Componentcentralspindlin complexInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0001640Molecular Functionadenylate cyclase inhibiting G protein-coupled glutamate receptor activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0007216Biological ProcessG protein-coupled glutamate receptor signaling pathwayInterproscan
GO:0051966Biological Processregulation of synaptic transmission, glutamatergicInterproscan
GO:0004725Molecular Functionprotein tyrosine phosphatase activityInterproscan
GO:0006470Biological Processprotein dephosphorylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K16733RACGAP1, Tum; Rac GTPase-activating protein 1-Transcription factorsko03000deepkoala
Chromosome and associated proteinsko03036deepkoala

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