Gene detail

Detailed information of g6034.t1 in Montipora capitata

Genomic Location: Sc0000125:537562...545881
NR annotation: XP_029195823.2, ER membrane protein complex subunit 1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6034.t1

atggcggcctggtggtatcgcgtgttccttctcgtttggatacaattccaacattgcgttggactttacgaggatcaagtggggctcttcgactggcgtcagtcctacttaggcaaagtaaaatattctttctttgatgtttccacgcatagcagcaagcgactgtttgttggaacagaatcaaatgtgatagccgcactgaattctagaactggtagtattatatggagacaagttttggaagagaaagaaggaaagttggatgcacttctttatcgcgagaacacgctaataagttcattaaatgccgggaaattcatacgatcatgggatacaagtaatggtgcgttgctttgggaagccgtgagcagatcgacgtctgcagttgtacgtgaaagaagttcaccatttcgtggatggaacggtgtccagacagccttgatcgaaagtaaagaaaacgagcttgtgattagtttggcaaataatgctgtgaaagcgttaacactccaagacggctctgaaaaatgggccattgaagaagctcaacaaagtgctgacttctttggctttcagcattttaacggatttttatattttgttggagtgaaaaatgagttgaatcttgttgctcagaaagttgatacaacggatggaaaagtgacaggggaaaaaatgattgcagctccgtggattagtggcagtgctagctgtatttttgtcaaaatatcaaacttggtttgtgtagagactttcagcaacagtatccatgttatttctcttgttgctgaatcaactgctataaacaccgtgtcgttagcatcattagggcttggtgttagtgatatagcagacagcacgcctgtgttagaggcactgggttcatttaccaattcctgggatggacgatcagagtttttgctgaagatttcaaacactcatcaactgctcttgaatttaaatagtgatcacaccatagcagttgtgacgacgtataccgtccagtctttgcttagtgcatctgtgcttggtaggaaggcagttttggtgtcgataacgcctgttgcagatgcatccgtagagtttcaatgttatgacttggacaccaagacgattcttccagacatgactcaaaaggcttatcttgcagatcatggagagccagatcaggctgttgtttacctgtttaacaaaaaagaaaatgagcttggttacagagttttattaatgacgacagatcatgcagtgtcgctgattcagtttccaggacgtatcatgtggtcacgagaagaagcgttggctacgataacagcagtggatgtcgttgagttaccattttcaccctcacaacaaaattttgaaacactcgaggaagagtttggggctcatccaaatgatgatgttttgtcaatgtttattcgccgcatccgtgcacaggtaaaacagttccaggtgcttgtaaagcaatttcaggcttttgtcaaagcacagcaggaacatgggttcctcactgaatcaacagaggataaagaagagcaactgacaagagatcgattcaacctgcgcaagctgattgttcttgtaacgtcatcagggaagctgtttggtttaaattccgctgatggaagcattgtttggaagtattttcttccaagtctggcgcctttcacgcaaaatggcaaacagtcctccttgctttacactcaacgaactgtcgcacacttccccctaactgctcagtgtgttgtccttggaaaatccaggacatcagagggttccttgttgcatgttttcaatccagtcactggcaaaccaattggacctggtcatcttaaaggaaaccagctgtcctataaagtgattcaatccatgcttctaccccacactgatgcaaaacataccaagttgcttcttctgctggattctacgctaaatgttcatgtgtttcctcgcactgctgaatctcttcagattgtttctaaagtagccacctcaattttcttcttccttgtcgacaaagagaacggtgaattgaaagggtacatgctccttccagaggcagagaaaagtagttttcatgtcagagaaatgtggaatgtgaaaatgccttcctcgcagcagactattactaatatagccaccaagagtctgttggagcatgttcattcacaaggtaaagttcttggtgacaggagggttctctacaaatacatgaatccaaacttgatagctgttggcactgaagtggctcctgatacgaagcctggtatttcaatctacctgatggatgctgtgacaggtcttattgtattccatgctcgtcacaagaatgctaaaggcccattgcacatggttcactcagagaactggctggtgtattgtttgttcaacacaaaatctcgcagatatgagcttactgtactagagatgtacgatggatatacagaaagaaacaggtgttctatgttgggcaagaattga

Transcript

g6034.t1

atggcggcctggTGGTATCGCGTGTTCCTTCTCGTTTGGATACAATTCCAACATTGCGTTGGACTTTACGAGGATCAAGTGGGGCTCTTCGACTGGCGTCAGTCCTACTTAGGCAAAgtaaaatattctttctttGATGTTTCCACGCATAGCAGCAAGCGACTGTTTGTTGGAACAGAATCAAATGTGATAGCCGCACTGAATTCTAGAACTGGTAGTATTATATGGAGACAAGTTTTGGAAGAGAAAGAAGGAAAGTTGGATGCACTTCTTTATCGCGAGAACACGCTAATAAGTTCATTAAATGCCGGGAAATTCATACGATCATGGGATACAAGTAATGGTGCGTTGCTTTGGGAAGCCGTGAGCAGATCGACGTCTGCAGTTGTACGTGAAAGAAGTTCACCATTTCGTGGATGGAACGGTGTCCAGACAGCCTTGATCGAAAGTAAAGAAAACGAGCTTGTGATTAGTTTGGCAAATAATGCTGTGAAAGCGTTAACACTCCAAGACGGCTCTGAAAAATGGGCCATTGAAGAAGCTCAACAAAGTGCTGACTTCTTTGGCTTTCAgcattttaacggatttttataTTTTGTTGGAGTGAAAAATGAGTTGAATCTTGTTGCTCAGAAAGTTGATACAACGGATGGAAAAGTGACAGGGGAAAAAATGATTGCAGCTCCGTGGATTAGTGGCAGTGCTAGCTgtatttttgtcaaaatatcaAACTTGGTTTGTGTAGAGACTTTCAGCAACAGTATCCATGTTATTTCTCTTGTTGCTGAATCAACTGCTATAAACACCGTGTCGTTAGCATCATTAGGGCTTGGTGTTAGTGATATAGCAGACAGCACGCCTGTGTTAGAGGCACTGGGTTCATTTACCAATTCCTGGGATGGACGATCAGAGTTTTTGCTGAAGATTTCAAACACTCATCAACTGCTCTTGAATTTAAATAGTGATCACACCATAGCAGTTGTGACGACGTATACCGTCCAGTCTTTGCTTAGTGCATCTGTGCTTGGTAGGAAGGCAGTTTTGGTGTCGATAACGCCTGTTGCAGATGCATCCGTAGAGTTTCAATGTTATGACTTGGACACCAAGACGATTCTTCCAGACATGACTCAAAAGGCTTATCTTGCAGATCATGGAGAGCCAGATCAGGCTGTTGTTTACCTgtttaacaaaaaagaaaatgagctTGGTTACAGAGTTTTATTAATGACGACAGATCATGCAGTGTCGCTGATTCAGTTTCCAGGACGTATCATGTGGTCACGAGAAGAAGCGTTGGCTACGATAACAGCAGTGGATGTCGTTGAGTTACCATTTTCACCCTCacaacaaaattttgaaacacTCGAGGAAGAGTTTGGGGCTCATCCAAATGatgatgttttgtcaatgtTTATTCGCCGCATCCGTGCACAGGTAAAACAGTTCCAGGTGCTTGTAAAGCAATTTCAGGCTTTTGTCAAAGCACAGCAGGAACATGGGTTCCTCACTGAATCAACAGAGGATAAAGAAGAGCAACTGACAAGAGATCGATTCAACCTGCGCAAGCTGATTGTTCTTGTAACGTCATCAGGGAAGCTGTTTGGTTTAAATTCCGCTGATGGAAGCATTGTTTGGAAGTATTTTCTTCCAAGTCTGGCGCCTTTCACGCAAAATGGCAAACAGTCCTCCTTGCTTTACACTCAACGAACTGTCGCACACTTCCCCCTAACTGCTCAGTGTGTTGTCCTTGGAAAATCCAGGACATCAGAGGGTTCCTTGTTGCATGTTTTCAATCCAGTCACTGGCAAACCAATTGGACCTGGTCATCTTAAAGGAAACCAGCTGTCCTATAAAGTGATTCAATCCATGCTTCTACCCCACACTGATGCAAAACATACCAAGTTGCTTCTTCTGCTGGATTCTACGCTAAATGTTCATGTGTTTCCTCGCACTGCTGAATCTCTTCAGATTGTTTCTAAAGTAGCCACCTCAATTTTCTTCTTCCTTGTCGACAAAGAGAACGGTGAATTGAAAGGGTACATGCTCCTTCCAGAGGCAGAGAAAAGTAGTTTTCATGTCAGAGAAATGTGGAATGTGAAAATGCCTTCCTCGCAGCAGACTATTACTAATATAGCCACCAAGAGTCTGTTGGAGCATGTTCATTCACAAGGTAAAGTTCTTGGTGACAGGAGGGTTCTCTACAAATACATGAATCCAAACTTGATAGCTGTTGGCACTGAAGTGGCTCCTGATACGAAGCCTGGTATTTCAATCTACCTGATGGATGCTGTGACAGGTCTTATTGTATTCCATGCTCGTCACAAGAATGCTAAAGGCCCATTGCACATGGTTCACTCAGAGAACTGGCTGGTGTATTGTTTGTTCAACACAAAATCTCGCAGATATGAGCTTACTGTACTAGAGATGTACGATGGATATACAGAAAGAAACAGGTGTTCTATGTTGGGCAAGAATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZL00	ER membrane protein complex subunit 1 OS=Gallus gallus OX=9031 GN=EMC1 PE=2 SV=1
Q8N766	ER membrane protein complex subunit 1 OS=Homo sapiens OX=9606 GN=EMC1 PE=1 SV=1
Q5R7K6	ER membrane protein complex subunit 1 OS=Pongo abelii OX=9601 GN=EMC1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007485 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13360 all species →	PQQ_2	PQQ-like domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026895 all species →	Family	ER membrane protein complex subunit 1	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR002372 all species →	Repeat	Pyrrolo-quinoline quinone repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21573 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0034975 all species →	Biological Process	protein folding in endoplasmic reticulum	Interproscan
GO:0072546 all species →	Cellular Component	EMC complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23562	EMC1; ER membrane protein complex subunit 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6034.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

39.3Max TPM

14.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	15.81	39.34
whole organisms · low pH treatment	15	15	12.96	34.43
whole organisms · extra low pH treatment pH treatment	12	12	13.81	35.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	39.34
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	34.98
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	31.14
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	30.24
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	29.36
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	22.29
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	19.84
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	19.51
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	16.77
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	16.35
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	14.80
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	13.13
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	12.16
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	7.53
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	6.77
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	4.59
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	3.90
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.77
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.72
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.36
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	1.37
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	34.43
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	26.46
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	25.27
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	17.60
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	16.38
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	15.61
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	15.15
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	12.29
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	12.05
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	4.11
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	4.10
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	3.81
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	3.12
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.98
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.08
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	35.02
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	28.01
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	18.54
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	18.26
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	17.60
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	15.78
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	14.19
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	5.77
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.48
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	3.42
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	3.39
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	1.23

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.