Genomic Location: not available for this species
NR annotation: KAJ7333825.1, Glycosyl transferases group 1 [Desmophyllum pertusum]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| A4FUP9 | Glycosyltransferase 1 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Glt1d1 PE=2 SV=2 |
| Q9NQZ2 | Something about silencing protein 10 OS=Homo sapiens OX=9606 GN=UTP3 PE=1 SV=1 |
| Q9I7W5 | Something about silencing protein 10 OS=Drosophila melanogaster OX=7227 GN=Sas10 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000146 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0001117 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0003407 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004411 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0004828 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0010484 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0021518 (this species only) · gene tree & orthology |
| Orthogroup (gene family) | OG0049950 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04000 all species → | Sas10_Utp3 | Sas10/Utp3/C1D family | Family | Interproscan |
| PF09368 all species → | Sas10 | Sas10 C-terminal domain | Domain | Interproscan |
| PF01079 all species → | Hint | Hint module | Family | Interproscan |
| PF04434 all species → | SWIM | SWIM zinc finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007146 all species → | Family | Sas10/Utp3/C1D | Interproscan |
| IPR018972 all species → | Domain | Sas10 C-terminal domain | Interproscan |
| IPR002119 all species → | Family | Histone H2A | Interproscan |
| IPR009072 all species → | Homologous_superfamily | Histone-fold | Interproscan |
| IPR052622 all species → | Family | Glycosyltransferase group 1 domain-containing protein | Interproscan |
| IPR029034 all species → | Homologous_superfamily | Cystine-knot cytokine | Interproscan |
| IPR052060 all species → | Family | Bromodomain and WD repeat-containing | Interproscan |
| IPR036397 all species → | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR001767 all species → | Domain | Hedgehog protein, Hint domain | Interproscan |
| IPR050387 all species → | Family | Hedgehog Signaling | Interproscan |
| IPR036844 all species → | Homologous_superfamily | Hint domain superfamily | Interproscan |
| IPR007527 all species → | Domain | Zinc finger, SWIM-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13237 all species → | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED | Interproscan |
| PTHR23430 all species → | HISTONE H2A | Interproscan |
| PTHR46660 all species → | - | Interproscan |
| PTHR33995 all species → | PROTEIN CBG18546 | Interproscan |
| PTHR16266 all species → | WD REPEAT DOMAIN 9 | Interproscan |
| PTHR22955 all species → | RETROTRANSPOSON | Interproscan |
| PTHR11889 all species → | HEDGEHOG | Interproscan |
| PTHR47456 all species → | PHD-TYPE DOMAIN-CONTAINING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000462 all species → | Biological Process | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| GO:0000786 all species → | Cellular Component | nucleosome | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0030527 all species → | Molecular Function | structural constituent of chromatin | Interproscan |
| GO:0046982 all species → | Molecular Function | protein heterodimerization activity | Interproscan |
| GO:0000790 all species → | Cellular Component | chromatin | Interproscan |
| GO:0006342 all species → | Biological Process | heterochromatin formation | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0007010 all species → | Biological Process | cytoskeleton organization | Interproscan |
| GO:0008360 all species → | Biological Process | regulation of cell shape | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| GO:0016540 all species → | Biological Process | protein autoprocessing | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14767 | UTP3, SAS10; U3 small nucleolar RNA-associated protein 3 | - | Ribosome biogenesis | ko03009 | deepkoala |
Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
