Gene detail

Detailed information of g606.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_020609060.1, coiled-coil domain-containing protein 62-like isoform X2 [Orbicella faveolata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
E9PVD1	Coiled-coil domain-containing protein 62 OS=Mus musculus OX=10090 GN=Ccdc62 PE=1 SV=1
Q6P9F0	Coiled-coil domain-containing protein 62 OS=Homo sapiens OX=9606 GN=CCDC62 PE=1 SV=2
Q91VN0	Low-density lipoprotein receptor-related protein 5 OS=Mus musculus OX=10090 GN=Lrp5 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF02290	SRP14	Signal recognition particle 14kD protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR003210	Family	Signal recognition particle, SRP14 subunit	Interproscan
IPR009018	Homologous_superfamily	Signal recognition particle, SRP9/SRP14 subunit	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47027	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR46599	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan
PTHR47501	TRANSPOSASE-RELATED	Interproscan
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR33198	ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR32158	RING-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR12013	SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005786	Cellular Component	signal recognition particle, endoplasmic reticulum targeting	Interproscan
GO:0006614	Biological Process	SRP-dependent cotranslational protein targeting to membrane	Interproscan
GO:0008312	Molecular Function	7S RNA binding	Interproscan
GO:0030942	Molecular Function	endoplasmic reticulum signal peptide binding	Interproscan
GO:0045047	Biological Process	protein targeting to ER	Interproscan
GO:0048500	Cellular Component	signal recognition particle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03104	SRP14; signal recognition particle subunit SRP14	-	Membrane trafficking	ko04131	deepkoala
K03104	SRP14; signal recognition particle subunit SRP14	-	Secretion system	ko02044	deepkoala