Detailed information of g608.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_032816043.1, mediator of RNA polymerase II transcription subunit 25 isoform X7 [Petromyzon marinus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9VDR1Mediator of RNA polymerase II transcription subunit 25 OS=Drosophila melanogaster OX=7227 GN=MED25 PE=2 SV=1
Q8VCB2Mediator of RNA polymerase II transcription subunit 25 OS=Mus musculus OX=10090 GN=Med25 PE=1 SV=1
Q71SY5Mediator of RNA polymerase II transcription subunit 25 OS=Homo sapiens OX=9606 GN=MED25 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05208ALG3ALG3 proteinFamilyInterproscan
PF11232Med25Mediator complex subunit 25 PTOV activation and synapsin 2DomainInterproscan
PF11265Med25_VWAMediator complex subunit 25 von Willebrand factor type AFamilyInterproscan
PF00009GTP_EFTUElongation factor Tu GTP binding domainDomainInterproscan
PF00884SulfataseSulfataseFamilyInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF05577Peptidase_S28Serine carboxypeptidase S28DomainInterproscan
PF13417GST_N_3Glutathione S-transferase, N-terminal domainDomainInterproscan
PF00043GST_CGlutathione S-transferase, C-terminal domainDomainInterproscan
PF05649Peptidase_M13_NPeptidase family M13FamilyInterproscan
PF02984Cyclin_CCyclin, C-terminal domainDomainInterproscan
PF20700MutatorMutator-like transposaseDomainInterproscan
PF14658EF-hand_9EF-hand domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007873FamilyGlycosyltransferase, ALG3Interproscan
IPR038196Homologous_superfamilyMediator complex subunit 25, PTOV domain superfamilyInterproscan
IPR021394DomainMediator complex, subunit Med25, PTOV domainInterproscan
IPR021419DomainMediator of RNA polymerase II transcription subunit 25, von Willebrand factor type A domainInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR031157Conserved_siteTr-type G domain, conserved siteInterproscan
IPR000795DomainTranslational (tr)-type GTP-binding domainInterproscan
IPR006297FamilyElongation factor 4Interproscan
IPR017850Homologous_superfamilyAlkaline-phosphatase-like, core domain superfamilyInterproscan
IPR047115FamilyArylsulfatase BInterproscan
IPR000917DomainSulfatase, N-terminalInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR042269Homologous_superfamilySerine carboxypeptidase S28, SKS domainInterproscan
IPR008758FamilyPeptidase S28Interproscan
IPR029058Homologous_superfamilyAlpha/Beta hydrolase foldInterproscan
IPR004045DomainGlutathione S-transferase, N-terminalInterproscan
IPR004046DomainGlutathione S-transferase, C-terminalInterproscan
IPR036249Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR050983FamilyGlutathione S-transferase Omega/HSP26Interproscan
IPR010987DomainGlutathione S-transferase, C-terminal-likeInterproscan
IPR040079FamilyGlutathione transferase familyInterproscan
IPR036282Homologous_superfamilyGlutathione S-transferase, C-terminal domain superfamilyInterproscan
IPR008753DomainPeptidase M13, N-terminal domainInterproscan
IPR000718FamilyPeptidase M13Interproscan
IPR042089Homologous_superfamilyPeptidase M13, domain 2Interproscan
IPR024079Homologous_superfamilyMetallopeptidase, catalytic domain superfamilyInterproscan
IPR036915Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR013763DomainCyclin-like domainInterproscan
IPR043198FamilyCyclin/Cyclin-like subunit Ssn8Interproscan
IPR004367DomainCyclin, C-terminal domainInterproscan
IPR049012DomainMutator-like transposase domainInterproscan
IPR039508DomainProtein KASH5, EF-hand-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12646NOT56 - RELATEDInterproscan
PTHR12433MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25Interproscan
PTHR43512TRANSLATION FACTOR GUF1-RELATEDInterproscan
PTHR10342ARYLSULFATASEInterproscan
PTHR46599PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR11010PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATEDInterproscan
PTHR43968-Interproscan
PTHR11733ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATEDInterproscan
PTHR10026CYCLINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000030Molecular Functionmannosyltransferase activityInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0006486Biological Processprotein glycosylationInterproscan
GO:0052925Molecular Functiondol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activityInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0043022Molecular Functionribosome bindingInterproscan
GO:0045727Biological Processpositive regulation of translationInterproscan
GO:0097177Molecular Functionmitochondrial ribosome bindingInterproscan
GO:0008484Molecular Functionsulfuric ester hydrolase activityInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0070008Molecular Functionserine-type exopeptidase activityInterproscan
GO:0005764Cellular ComponentlysosomeInterproscan
GO:0005768Cellular ComponentendosomeInterproscan
GO:0008239Molecular Functiondipeptidyl-peptidase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0016485Biological Processprotein processingInterproscan
GO:0008237Molecular Functionmetallopeptidase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016538Molecular Functioncyclin-dependent protein serine/threonine kinase regulator activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00799GST, gst; glutathione S-transferaseEC:2.5.1.18
Transcription machineryko03021deepkoala
Peptidases and inhibitorsko01002deepkoala
Transportersko02000deepkoala

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