Detailed information of g61.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047128666.1, transmembrane protein 39A [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q0VCF5Transmembrane protein 39A OS=Bos taurus OX=9913 GN=TMEM39A PE=2 SV=1
Q9NV64Transmembrane protein 39A OS=Homo sapiens OX=9606 GN=TMEM39A PE=1 SV=1
Q6PH58Transmembrane protein 39A OS=Danio rerio OX=7955 GN=tmem39a PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyTHAP
Ubiquitin FamilyUBD|Other|Beta-prp

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF13456RVT_3Reverse transcriptase-likeDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF06565DM10_domDM10 domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF10271Tmp39Putative transmembrane proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR003107RepeatHAT (Half-A-TPR) repeatInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR053016FamilyCTF18-RFC complex componentInterproscan
IPR002156DomainRibonuclease H domainInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR038441Homologous_superfamilyTHAP-type zinc finger superfamilyInterproscan
IPR006602DomainDM10 domainInterproscan
IPR040193FamilyEF-hand domain-containing protein EFHC1/EFHC2/EFHBInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR052778FamilyCentrosome-associated WD domain-containing proteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR019397FamilyUncharacterised protein family TMEM39Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR17204PRE-MRNA PROCESSING PROTEIN PRP39-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR46765P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEINInterproscan
PTHR47577THAP DOMAIN-CONTAINING PROTEIN 6Interproscan
PTHR12086EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEINInterproscan
PTHR16220WD REPEAT PROTEIN 8-RELATEDInterproscan
PTHR12995UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0000243Cellular Componentcommitment complexInterproscan
GO:0000395Biological ProcessmRNA 5'-splice site recognitionInterproscan
GO:0005685Cellular ComponentU1 snRNPInterproscan
GO:0030627Molecular Functionpre-mRNA 5'-splice site bindingInterproscan
GO:0071004Cellular ComponentU2-type prespliceosomeInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004523Molecular FunctionRNA-DNA hybrid ribonuclease activityInterproscan
GO:0000281Biological Processmitotic cytokinesisInterproscan
GO:0005874Cellular ComponentmicrotubuleInterproscan
GO:0005930Cellular ComponentaxonemeInterproscan
GO:0007052Biological Processmitotic spindle organizationInterproscan
GO:0010975Biological Processregulation of neuron projection developmentInterproscan
GO:0043014Molecular Functionalpha-tubulin bindingInterproscan
GO:0060285Biological Processcilium-dependent cell motilityInterproscan
GO:0072686Cellular Componentmitotic spindleInterproscan
GO:0005815Cellular Componentmicrotubule organizing centerInterproscan
GO:1990810Biological Processmicrotubule anchoring at mitotic spindle pole bodyInterproscan
GO:1990811Cellular ComponentMWP complexInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13217PRPF39, PRP39; pre-mRNA-processing factor 39-Protein kinasesko01001deepkoala
Spliceosomeko03041deepkoala

TOP