Gene detail

Detailed information of g610.t1 in Montipora capitata

Genomic Location: Sc0000006:243350...281331
NR annotation: XP_029211326.2, 5'-3' exoribonuclease 2-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g610.t1

atgggagttccagccttctttcgttggctttcgaagaaatatccgtcgatagtcgtacactgtgtcgaagaaaaggcccgtgaagttaatggtgtcacggcccctgtggatacaagtttgccaaaccccaatgattatgaatttgataacttgtatcttgatatgaatggtatcatccatccatgctgccacccagaaaacaagcctgctccacagaatgaagatgagatgatggtggcaatctttgaatacattgacagaattttttctattgtgagaccaagaaagttactttacatggccattgatggagtggctccaagagcaaaaatgaatcaacaaagatcacgccgtttcagagcatcaaaggaatccagagaaaaagctgaagaaattgcaaagatacgtagtgaactaaaagaaagaggagcagcccttccccctgaaaaagaaaaaacagaacattttgacagtaactgcattacacctggaactgagttcatggccaatttatccttatgtttgaggtactatatcgcagacagactgaacaatgatcctggatggaagaatataaaggtcatcctgtcagatgctaatgtaccaggggaaggagagcataaaatcatggactacataagaaagcagagagcaaacccaaatcatgaccccaatacaaagcattgtctaaatggagccgatggtcttgctacgcatgaacttcattttacaattatcagggaagagtttaaaccaaaccagaaaaaaccatgtgagatctgtggacaaatagggcatgccatggatgaatgcatgggacttcccaaagaaaaacagggagagtttgacgagttgcctgcacctgtggctcaagatgtggaatttatttttatcaggttaaatgttttgcgagagcgctgtcttgatgactgggtattcatgtgcttctttgtaggaaatgatttcctgcctcatttgccatcactggaaatcagggaaggagccattgatagactcgttggaatttacaagagagttctaccaagatgtggggtagagcttggttatgttgaagatgagatctttaaaaagaggcaacaaaatgatgatggacctttgtggacccccagtggtcagtttagcccaagcgtcatcacaaactctccatcacctattgtgaacccacggcaagaggcttatgccatgaggaaacaaggcatgtcatacagtgccgataggacaacacctcagaatgaggccaacaagagtgctgcagctagtttgaaagcaattcttactacatgtacaccatcgccagatccaagtatgtcatctgcagcaagcacacccaactctgtatcatcaacgggtaagagaaagcagaatgatgatgacgatgaagaggaacccaaggatgacataaggttgtgggaagcaggctggaagggacgttattaccaaaacaagtttcaactttctgagaatgatgtaggatatgatgatttcaggaagaaagtggctgatgcttatgtggaaggactctgttgggtgttactctattattaccaaggttgcccatcatggaaatggttttatccttatcactacgcaccatttgcatctgattttcgtgacattcattcccttcgcaactcatttgagagtggaacacaaccgttcaaacccctggagcagctgatgggagttttcccggcggccagtggcaagttccttcctccgacgtggagggagctcatgtcaaacccagagtctccaataatcgatttctatcctcaagactttgcaattgacctcaatgggaaaaaatatgcctggcaaggtgtggctttattgccctttgttgatgaaaaaaggctgctttctgctcttagcaaagtatacgcggatttaacaatatcagaaaaaacaaggaacagtaggggtaaagatcgcctgtttctccgtcaaggaaatcccgtgtttgacttcctagtcggtttgtacgaaggtggcgcagtggaagagccagtggatattgttgctgacctcagtggaggaatgtcaggcaaggttcagccagatgatgttccgatccttccacgcaaaactgttctttctccccttcctaatctttacgatttgaaggacaaccgatcaataagtgtgttgtttggtgatcccgtttatgaggagggtcacatttataaagcagatattttacctaaagcacaatttccagctcgtgttcttaaaccagagggatatgaccaaaaaactccatacagacccgttattggcatgaatgccaacaggacgtcgtttgcgcaaattggcgacgctggtcgacggatgctgaagtacgtaatggttatttaa

Transcript

g610.t1

ATGGGAGTTCCAGCCTTCTTTCGTTGGCTTTCGAAGAAATATCCGTCGATAGTCGTACACTGTGTCGAAGAAAAGGCCCGTGAAGTTAATGGTGTCACGGCCCCTGTGGATACAAGTTTGCCAAACCCCAATGATTATGAATTTGATAACTTGTATCTTGATATGAATGGTATCATCCATCCATGCTGCCACCCAGAAAACAAGCCTGCTCCACAGAATGAAGATGAGATGATGGTGGCAATCTTTGAATACATTGACAGaattttttCTATTGTGAGACCAAGAAAGTTACTTTACATGGCCATTGATGGAGTGGCTCCAAGAGCAAAAATGAATCAACAAAGATCACGCCGTTTCAGAGCATCAAAGGAATCCAGagaaaaagCTGAAGAAATTGCAAAGATACGTAGTGAACTAAAAGAAAGAGGAGCAGCCCTTCcccctgaaaaagaaaaaacagaacattttgaCAGTAACTGCATTACACCTGGAACTGAGTTCATGGCCAATTTATCCTTATGTTTGAGGTACTATATCGCAGACAGACTGAACAATGATCCTGGATGGAAGAATATAAAGGTCATCCTGTCAGATGCTAATGTACCAGGGGAAGGAGAGCATAAAATCATGGACTACATAAGAAAGCAGAGAGCAAACCCAAATCATGACCCCAATACAAAGCATTGTCTAAATGGAGCCGATGGTCTTGCTACGCATGAACTTCATTTTACAATTATCAGGGAAGAGTTTAAACCAAACCAGAAAAAACCATGTGAGATCTGTGGACAAATAGGGCATGCCATGGATGAATGCATGGGACTTCCCAAAGAAAAACAGGGAGAGTTTGACGAGTTGCCTGCACCTGTGGCTCAAGATGtggaatttatttttatcaGGTTAAATGTTTTGCGAGAGCGCTGTCTTGATGACTGGGTATTCATGTGCTTCTTTGTAGGAAATGATTTCCTGCCTCATTTGCCATCACTGGAAATCAGGGAAGGAGCCATTGATAGACTCGTTGGAATTTACAAGAGAGTTCTACCAAGATGTGGGGTAGAGCTTGGTTATGTTGAAGATGAGATCTTTAAAAAGAGGCAACAAAATGATGATGGACCTTTGTGGACCCCCAGTGGTCAGTTTAGCCCAAGCGTCATCACAAACTCTCCATCACCTATTGTGAACCCACGGCAAGAGGCTTATGCCATGAGGAAACAAGGCATGTCATACAGTGCCGATAGGACAACACCTCAGAATGAGGCCAACAAGAGTGCTGCAGCTAGTTTGAAAGCAATTCTTACTACATGTACACCATCGCCAGATCCAAGTATGTCATCTGCAGCAAGCACACCCAACTCTGTATCATCAACGGGTAAGAGAAAGCagaatgatgatgacgatgaagagGAACCCAAGGATGACATAAGGTTGTGGGAAGCAGGCTGGAAGGGACGTTATTACCAAAACAAGTTTCAACTTTCTGAGAATGATGTAGGATATGATGATTTCAGGAAGAAAGTGGCTGATGCTTATGTGGAAGGACTCTGTTGGGTGTTACTCTATTATTACCAAGGTTGCCCATCATGGAAATGGTTTTATCCTTATCACTACGCACCATTTGCATCTGATTTTCGTGACATTCATTCCCTTCGCAACTCATTTGAGAGTGGAACACAACCGTTCAAACCCCTGGAGCAGCTGATGGGAGTTTTCCCGGCGGCCAGTGGCAAGTTCCTTCCTCCGACGTGGAGGGAGCTCATGTCAAACCCAGAGTCTCCAATAATCGATTTCTATCCTCAAGACTTTGCAATTGACCTCAATGGGAAAAAATATGCCTGGCAAGGTGTGGCTTTATTGCCCTTTGTTGATGAAAAAAGGCTGCTTTCTGCTCTTAGCAAAGTATACGCGGATTTAACAATATCAGAAAaaaCAAGGAACAGTAGGGGTAAAGATCGCCTGTTTCTCCGTCAAGGAAATCCCGTGTTTGACTTCCTAGTCGGTTTGTACGAAGGTGGCGCAGTGGAAGAGCCAGTGGATATTGTTGCTGACCTCAGTGGAGGAATGTCAGGCAAGGTTCAGCCAGATGATGTTCCGATCCTTCCACGCAAAACTGTTCTTTCTCCCCTTCCTAATCTTTACGATTTGAAGGACAACCGATCAATAAGTGTGTTGTTTGGTGATCCCGTTTATGAGGAGGGTCACATTTATAAAGCAGATATTTTACCTAAAGCACAATTTCCAGCTCGTGTTCTTAAACCAGAGGGATATGACCAAAAAACTCCATACAGACCCGTTATTGGCATGAATGCCAACAGGACGTCGTTTGCGCAAATTGGCGACGCTGGTCGACGGATGCTGAAGTACGTAATGGTTATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZIP4	5'-3' exoribonuclease 2 OS=Gallus gallus OX=9031 GN=XRN2 PE=2 SV=1
Q9DBR1	5'-3' exoribonuclease 2 OS=Mus musculus OX=10090 GN=Xrn2 PE=1 SV=1
Q9H0D6	5'-3' exoribonuclease 2 OS=Homo sapiens OX=9606 GN=XRN2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001148 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17846 all species →	XRN_M	Xrn1 helical domain	Domain	Interproscan
PF03159 all species →	XRN_N	XRN 5'-3' exonuclease N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041412 all species →	Domain	Xrn1, helical domain	Interproscan
IPR004859 all species →	Domain	Xrn1, N-terminal	Interproscan
IPR027073 all species →	Family	5'-3' exoribonuclease	Interproscan
IPR017151 all species →	Family	5'-3' exoribonuclease type 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12341 all species →	5'->3' EXORIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004527 all species →	Molecular Function	exonuclease activity	Interproscan
GO:0004534 all species →	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12619	XRN2, RAT1; 5'-3' exoribonuclease 2	EC:3.1.13.-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.