Gene detail

Detailed information of g613.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAB3980855.1, bifunctional polynucleotide phosphatase kinase isoform X2 [Paramuricea clavata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JLV6	Bifunctional polynucleotide phosphatase/kinase OS=Mus musculus OX=10090 GN=Pnkp PE=1 SV=2
Q96T60	Bifunctional polynucleotide phosphatase/kinase OS=Homo sapiens OX=9606 GN=PNKP PE=1 SV=1
Q19683	Uncharacterized protein F21D5.5 OS=Caenorhabditis elegans OX=6239 GN=F21D5.5 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0001071 (this species only)
Orthogroup (gene family)	OG0002282 (this species only)
Orthogroup (gene family)	OG0002535 (this species only)
Orthogroup (gene family)	OG0002702 (this species only)
Orthogroup (gene family)	OG0006114 (this species only)
Orthogroup (gene family)	OG0007823 (this species only)
Orthogroup (gene family)	OG0013715 (this species only)
Orthogroup (gene family)	OG0020857 (this species only)
Orthogroup (gene family)	OG0059592 (this species only)
Orthogroup (gene family)	OG0171304 (this species only)
Orthogroup (gene family)	OG0171830 (this species only)
Orthogroup (gene family)	OG0172111 (this species only)
Orthogroup (gene family)	OG0173340 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07662 all species →	Nucleos_tra2_C	Na+ dependent nucleoside transporter C-terminus	Family	Interproscan
PF07727 all species →	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan
PF17913 all species →	FHA_2	FHA domain	Domain	Interproscan
PF13671 all species →	AAA_33	AAA domain	Domain	Interproscan
PF08645 all species →	PNK3P	Polynucleotide kinase 3 phosphatase	Family	Interproscan
PF06094 all species →	GGACT	Gamma-glutamyl cyclotransferase, AIG2-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR008276 all species →	Family	Concentrative nucleoside transporter	Interproscan
IPR011657 all species →	Domain	Concentrative nucleoside transporter C-terminal domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR013103 all species →	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR052510 all species →	Family	Oomycete RxLR Effector	Interproscan
IPR026201 all species →	Family	Centrosomal protein of 290kDa	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR006551 all species →	Domain	Polynucleotide 3'-phosphatase	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR041388 all species →	Domain	PNK, FHA domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013954 all species →	Family	Polynucleotide kinase 3 phosphatase	Interproscan
IPR006549 all species →	Domain	HAD-superfamily hydrolase,subfamily IIIA	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR013024 all species →	Domain	Gamma-glutamyl cyclotransferase-like	Interproscan
IPR017939 all species →	Family	Gamma-glutamylcyclotransferase	Interproscan
IPR009288 all species →	Domain	Gamma-glutamylcyclotransferase, AIG2-like domain	Interproscan
IPR036568 all species →	Homologous_superfamily	Gamma-glutamyl cyclotransferase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46331 all species →	VALACYCLOVIR HYDROLASE	Interproscan
PTHR10590 all species →	SODIUM/NUCLEOSIDE COTRANSPORTER	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR45895 all species →	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR18879 all species →	CENTROSOMAL PROTEIN OF 290 KDA	Interproscan
PTHR12083 all species →	BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE	Interproscan
PTHR12935 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017171 all species →	Molecular Function	serine hydrolase activity	Interproscan
GO:0005337 all species →	Molecular Function	nucleoside transmembrane transporter activity	Interproscan
GO:0005415 all species →	Molecular Function	nucleoside:sodium symporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015293 all species →	Molecular Function	symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:1901642 all species →	Biological Process	nucleoside transmembrane transport	Interproscan
GO:0034451 all species →	Cellular Component	centriolar satellite	Interproscan
GO:0035869 all species →	Cellular Component	ciliary transition zone	Interproscan
GO:0097711 all species →	Biological Process	ciliary basal body-plasma membrane docking	Interproscan
GO:1905349 all species →	Biological Process	ciliary transition zone assembly	Interproscan
GO:1905515 all species →	Biological Process	non-motile cilium assembly	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0046403 all species →	Molecular Function	polynucleotide 3'-phosphatase activity	Interproscan
GO:0046404 all species →	Molecular Function	ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	Interproscan
GO:0046939 all species →	Biological Process	obsolete nucleotide phosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003839 all species →	Molecular Function	gamma-glutamylcyclotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08073	PNKP; bifunctional polynucleotide phosphatase/kinase	EC:3.1.3.32 EC:2.7.1.78	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.