Gene detail

Detailed information of g616.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047133508.1, neutral alpha-glucosidase AB [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BHN3	Neutral alpha-glucosidase AB OS=Mus musculus OX=10090 GN=Ganab PE=1 SV=1
P79403	Neutral alpha-glucosidase AB OS=Sus scrofa OX=9823 GN=GANAB PE=1 SV=1
Q14697	Neutral alpha-glucosidase AB OS=Homo sapiens OX=9606 GN=GANAB PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000738 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001155 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002784 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002887 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003166 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004762 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006624 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007570 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008171 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0012304 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0017061 (this species only) · gene tree & orthology
Transcription factor family	zf-CCCH · all TF in this species
Ubiquitin family	UBD\|Alpha-Helix\|GAT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00333 all species →	Ribosomal_S5	Ribosomal protein S5, N-terminal domain	Domain	Interproscan
PF03719 all species →	Ribosomal_S5_C	Ribosomal protein S5, C-terminal domain	Domain	Interproscan
PF13802 all species →	Gal_mutarotas_2	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain	Domain	Interproscan
PF21365 all species →	Glyco_hydro_31_3rd	Glycosyl hydrolase family 31 C-terminal domain	Domain	Interproscan
PF01055 all species →	Glyco_hydro_31_2nd	Glycosyl hydrolases family 31 TIM-barrel domain	Domain	Interproscan
PF12901 all species →	SUZ-C	SUZ-C motif	Domain	Interproscan
PF12752 all species →	SUZ	SUZ domain	Domain	Interproscan
PF20700 all species →	Mutator	Mutator-like transposase	Domain	Interproscan
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan
PF00642 all species →	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan
PF16172 all species →	DOCK_N	DOCK N-terminus	Family	Interproscan
PF03127 all species →	GAT	GAT domain	Domain	Interproscan
PF18308 all species →	GGA_N-GAT	N-terminal extension of GAT domain	Family	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF09336 all species →	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan
PF00743 all species →	FMO-like	Flavin-binding monooxygenase-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018192 all species →	Conserved_site	Small ribosomal subunit protein uS5, N-terminal, conserved site	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR013810 all species →	Domain	Small ribosomal subunit protein uS5, N-terminal	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR000851 all species →	Family	Small ribosomal subunit protein uS5	Interproscan
IPR005324 all species →	Domain	Small ribosomal subunit protein uS5, C-terminal	Interproscan
IPR005711 all species →	Family	Small ribosomal subunit protein uS5, eukaryotic/archaeal	Interproscan
IPR025887 all species →	Domain	Glycoside hydrolase family 31, N-terminal domain	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR048395 all species →	Domain	Glycosyl hydrolase family 31, C-terminal domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR000322 all species →	Domain	Glycoside hydrolase family 31, TIM barrel domain	Interproscan
IPR024642 all species →	Domain	SUZ-C domain	Interproscan
IPR024771 all species →	Domain	SUZ domain	Interproscan
IPR039228 all species →	Family	SUZ domain-containing protein 1	Interproscan
IPR049012 all species →	Domain	Mutator-like transposase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR050621 all species →	Family	Tudor domain-containing	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR036855 all species →	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR042455 all species →	Homologous_superfamily	Dedicator of cytokinesis, N-terminal, subdomain 1	Interproscan
IPR026791 all species →	Family	Dedicator of cytokinesis	Interproscan
IPR032376 all species →	Domain	Dedicator of cytokinesis, N-terminal domain	Interproscan
IPR004152 all species →	Domain	GAT domain	Interproscan
IPR027422 all species →	Family	ADP-ribosylation factor-binding protein GGA1-3	Interproscan
IPR041198 all species →	Domain	N-terminal extension of GAT domain	Interproscan
IPR038425 all species →	Homologous_superfamily	GAT domain superfamily	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR050304 all species →	Family	Microtubule-severing AAA ATPase	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR015415 all species →	Domain	Spastin/Vps4, C-terminal	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050346 all species →	Family	Flavin-containing Monooxygenases	Interproscan
IPR000960 all species →	Family	Flavin monooxygenase FMO	Interproscan
IPR020946 all species →	Family	Flavin monooxygenase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13718 all species →	RIBOSOMAL S SUBUNIT	Interproscan
PTHR22762 all species →	ALPHA-GLUCOSIDASE	Interproscan
PTHR31796 all species →	SUZ DOMAIN-CONTAINING PROTEIN 1	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR22948 all species →	TUDOR DOMAIN CONTAINING PROTEIN	Interproscan
PTHR45653 all species →	DEDICATOR OF CYTOKINESIS	Interproscan
PTHR45905 all species →	GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN	Interproscan
PTHR23074 all species →	AAA DOMAIN-CONTAINING	Interproscan
PTHR23023 all species →	DIMETHYLANILINE MONOOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0006491 all species →	Biological Process	N-glycan processing	Interproscan
GO:0090599 all species →	Molecular Function	alpha-glucosidase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0034394 all species →	Biological Process	protein localization to cell surface	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0051013 all species →	Biological Process	microtubule severing	Interproscan
GO:0140603 all species →	Molecular Function	obsolete ATP hydrolysis activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0004499 all species →	Molecular Function	N,N-dimethylaniline monooxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02981	RP-S2e, RPS2; small subunit ribosomal protein S2e	-	Ribosome	ko03011	deepkoala
K05546	GANAB; mannosyl-oligosaccharide alpha-1,3-glucosidase	EC:3.2.1.207	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	sequence table not available	–
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	sequence table not available	–
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →