Gene detail

Detailed information of g6204.t1 in Montipora capitata

Genomic Location: Sc0000130:327798...356197
NR annotation: XP_044176422.1, rho GTPase-activating protein 26-like isoform X2 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6204.t1

atggggcttaagcctctagaattcgaggactgtattttggatagcccttattttcgcgagaacattcacgaacatgagagagagctcgaaaggacgaacgaggctatcaaaggactcattaaggaatgtaaaacagttctgaaagctatcgaaaacttgtctaaagctcagaggagttttgctcaagtactaaatgactttagatttgagtgtattggagaggtagaaacagatgacgaagttcttattgctgatgctttgaaggaatttggcaaaattattgacagtgtggaggatgaacgcgacataatgttaaaccatgctaatgctcagttaattgttccactggagacatttagaaaggagcagattggtagagcaaaggaagaaaagaagaaatttgataaacaaacagataaatattgtttagcagtacaaaactacctaaacttgtctgcaaagaagaaagaagcatttttgcaggaggcggacactcagctccaaatggaaaaacgtgcatttcatcagacggcattggattatgttgttaagttgcaagaggttaatgaaaaaaagaaatttgaatttgtggaaacacttttatcttttatgtatgggcacatgaccttctttcatagtggtcatgaagtatttaatgattacatggaatatatgacagagctccagcttagacttcaaaatacaagagaacgatttgacaccacacaagtggaagcagaaagtcttatgagtcgagttcaacagaaagcacaaagtggggagctccaatatagtggtgcacatacaagacaaggatatcttggggtccaaaagaaaggaggcctgggtaccacgtggaacaagcattactgcatgtacactaaggaaaacaagattcttacgatgatcccttacacacaaacacaaggaagactcaatgcatcaacagacacaatgctggtcacatcctgtgtcagaaaaatgacagactcaattgatagaagatttacctttgaaataacagcatttgaaaggacccaacccattttattacaagcacaagatgaggaagacagaaaatcatggctggaagctatggatggcaaggaacctgtgtatatggactcccatagcattccaaagttcaaagacaaggaaactaaagaccttgagcttacgttcatcacaaattgtatttcagcagtggagaaaagaggtatcacagatcaggggctttacagaattgttggtgtggggtccaaagttcaaaatctccttcttcaatgcattgacaggaagaagatttcttcaatcgacctagcagaggaggactgcgagtgggaggtcaagacaatcactagtgctctcaagcagtatttgaggaacatggcagagcctttgtttacttacgatcaccatgaacagttcttggatgcagttaaaaaagacacctttgagaagagagtagatgccttaacatctcttgtggcaagtctaccagaagaaaacagaagtcttataaggacaataatgaggcatttaactcgagttgctgcccattccaacaagaatcttatggctgcaagcaaccttggtgttgtctttggtccaacactgatgaagtcgagagaagaatctatggcagcaatcatgaatttaaagtatcagagcatagttattgaacttcttataaaggaatttagcacaatatttggacctgatagtccagatggtatcaaagacaaacccaactccacaaattctgtgccagtcagtacaaatcctttcttggaggatgattcagaaaactcctcagatatcaatgacaagccaacacgtttgcctaagaaaagaaacagtgatgactcaggaataaaatgtaacgacaacaaaaatgttacatcctccaagccactcctccctcccaagggatattgtgccccacccccacccagtaacaaacctactcctgctgcccggccaagagttaaagccatgattgtgtcagattctgaagaggatctaagcagtgtatcagacccatcaagcacaaattcaactcctcagagtgaaggcaaggcacccctttcaccaagagatttctggagagaaagagatgctggaaaaccaactccaccccccaagagaccggatgtagttgctcagtttaaaaacagacaagtagccaacgattcaagaccattttctatgattgatgattccatgaatgacaaggaatcttctcatgcgatccgacgtgtcagcagtcagagtggtaacctcaacaggggactgcagtcatgggggacccgacctcccccactcccacgggaaccaccccctaaggaggaacctacaccatcgccgcaaacaaaaacgcctaagaaagtgaagacagtctatccttgtgtggccgagaacagttccgagctgtcatttgatgctggcattgtcatctccaacgttcggccctcgaaagaacccggatggttggaaggaacgttaaacggaagaacaggtcttatcccggaaaattatgttgaaccaatgatatag

Transcript

g6204.t1

ATGGGGCTTAAGCCTCTAGAATTCGAGGACTGTATTTTGGATAGCCCTTATTTTCGCGAGAACATTCACGAACATGAGAGAGAGCTCGAAAGGACGAACGAGGCTATCAAAGGACTCATTAAGGAATGTAAAACAGTTCTGAAAGCTATCGAAAACTTGTCTAAAGCTCAGAGGAGTTTTGCTCAAGTACTAAATGACTTTAGATTTGAGTGTATTGGAGAGGTAGAAACAGATGACGAAGTTCTTATTGctGATGCTTTGAaggaatttggcaaaattattgacagTGTGGAGGATGAACGCGACATAATGTTAAACCATGCTAATGCTCAGTTAATTGTTCCACTGGAGACATTTAGAAAGGAGCAGATTGGTAGAGCAAAGgaagaaaagaagaaatttgATAAACAAACAGATAAATATTGTTTAGCAGTACAAAACTACCTAAACTTGTCTGCAAAGAAGAAAGAAGCATTTTTGCAGGAGGCGGACACTCAGCTCCAAATGGAAAAACGTGCATTTCATCAGACGGCATTGGATTATGTTGTTAAGTTGCAAGAGgttaatgaaaaaaagaaatttgaatttgtGGAAACACTTTTATCTTTTATGTATGGGCACATGACCTTCTTTCATAGTGGTCATGAAGTATTTAATGATTACATGGAATATATGACAGAGCTCCAGCTTAGACTTCAAAATACAAGAGAACGATTTGACACCACACAAGTGGAAGCAGAAAGTCTTATGAGTCGAGTTCAACAGAAAGCACAAAGTGGGGAGCTCCAATATAGTGGTGCACATACAAGACAAGGATATCTTGGGGTCCAAAAGAAAGGAGGCCTGGGTACCACGTGGAACAAGCATTACTGCATGTACACTAAGGAAAACAAGATTCTTACGATGATCCCTTACACACAAACACAAGGAAGACTCAATGCATCAACAGACACAATGCTGGTCACATCCTGTGTCAGaaaaatgACAGACTCAATTGATAGAAGATTTACCTTTGAAATAACAGCATTTGAAAGGACCCAACCCATTTTATTACAAGCACAAGATGAGGAAGACAGAAAATCATGGCTGGAAGCTATGGATGGCAAGGAACCTgTGTATATGGACTCCCATAGCATTCCAAAGTTCAAAGACAaggAAACTAAAGACCTTGAGCTTACGTTCATCACAAATTGTATTTCAGCAGTGGAGAAAAGAGGTATCACAGATCAGGGGCTTTACAGAATTGTTGGTGTGGGGTCCAAAGTTCAAAATCTCCTTCTTCAATGCATTGACAGGAAGAAGATTTCTTCAATCGACCTAGCAGAGGAGGACTGCGAGTGGGAGGTCAAGACAATCACTAGTGCTCTCAAGCAGTATTTGAGGAACATGGCAGAGCCTTTGTTTACTTACGATCACCATGAACAGTTCTTGGATGCAGTTAAAAAAGACACCTTTGAGAAGAGAGTAGATGCCTTAACATctcttgtggcaagtctaccaGAAGAAAACAGAAGTCTTATAAGGACAATAATGAGGCATTTAACTCGAGTTGCTGCCCATTCCAACAAGAATCTTATGGCTGCAAGCAACCTTGGTGTTGTCTTTGGTCCAACACTGATGAAGTCGAGAGAAGAATCTATGGCAGCAATCATGAATTTAAAGTATCAGAGCATAGTTATTGAACTTCTTATAAAGGAATTTAGCACAATATTTGGACCTGATAGTCCAGATGGTATCAAAGACAAACCCAACTCCACAAATTCTGTGCCAGTCAGTACAAATCCTTTCTTGGAGGATGATTCAGAAAACTCCTCAGATATCAATGACAAGCCAACACGTTTGCCTAAGAAAAGAAACAGTGATGACTCAGGAATAAAATGTAACGACAACAAAAATGTTACATCCTCCAAGCCACTCCTCCCTCCCAAGGGATATTGTGCCCCACCCCCACCCAGTAACAAACCTACTCCTGCTGCCCGGCCAAGAGTTAAAGCCATGATTGTGTCAGATTCTGAAGAGGATCTAAGCAGTGTATCAGACCCATCAAGCACAAATTCAACTCCTCAGAGTGAAGGCAAGGCACCCCTTTCACCAAGAGATTTCTGGAGAGAAAGAGATGcTGGAAAACCAACTCCACCCCCCAAGAGACCGGATGTAGTTGCTCAGTTTAAAAACAGACAAGTAGCCAACGATTCAAGACCATTTTCTATGATTGATGATTCCATGAATGACAAGGAATCTTCTCATGCGATCCGACGTGTCAGCAGTCAGAGTGGTAACCTCAACAGGGGACTGCAGTCATGGGGGACCCGACCTCCCCCACTCCCACGGGAACCACCCCCTAAGGAGGAACCTACACCATCGCCGCAAACAAAAACGCCTAAGAAAGTGAAGACAGTCTATCCTTGTGTGGCCGAGAACAGTTCCGAGCTGTCATTTGATGCTGGCATTGTCATCTCCAACGTTCGGCCCTCGAAAGAACCCGGATGGTTGGAAGGAACGTTAAACGGAAGAACAGGTCTTATCCCGGAAAATTATGTTGAACCAATGATATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UNA1	Rho GTPase-activating protein 26 OS=Homo sapiens OX=9606 GN=ARHGAP26 PE=1 SV=1
Q6ZQ82	Rho GTPase-activating protein 26 OS=Mus musculus OX=10090 GN=Arhgap26 PE=1 SV=3
A1A4S6	Rho GTPase-activating protein 10 OS=Homo sapiens OX=9606 GN=ARHGAP10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002561 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF16746 all species →	BAR_3	BAR domain of APPL family	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR047234 all species →	Family	GRAF family	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR004148 all species →	Domain	BAR domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR047225 all species →	Domain	GRAF, PH domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12552 all species →	OLIGOPHRENIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20071	ARHGAP26, GRAF; Rho GTPase-activating protein 26	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6204.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

146.6Max TPM

59.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	56.68	146.21
whole organisms · low pH treatment	15	15	63.20	146.59
whole organisms · extra low pH treatment pH treatment	12	12	59.86	140.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	146.21
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	141.15
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	129.59
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	90.61
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	89.16
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	87.95
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	80.97
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	67.00
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	55.36
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	48.69
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	48.23
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	42.77
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	38.59
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	34.09
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	33.27
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	14.06
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	11.99
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	11.56
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	8.20
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	7.75
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	3.10
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	146.59
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	143.19
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	139.09
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	87.83
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	85.26
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	81.84
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	55.27
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	54.95
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	38.25
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	32.46
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	29.26
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	28.41
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	12.82
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	6.83
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	6.00
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	140.38
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	134.07
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	89.27
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	86.02
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	67.30
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	58.95
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	45.63
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	43.71
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	34.25
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	8.42
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	5.83
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.46

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.