Detailed information of g623.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_012558107.2, probable methyltransferase TARBP1 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

 Sequence
Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E9Q368tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1 OS=Mus musculus OX=10090 GN=Tarbp1 PE=1 SV=1
Q13395tRNA (guanosine(18)-2'-O)-methyltransferase TARBP1 OS=Homo sapiens OX=9606 GN=TARBP1 PE=1 SV=1
Q07527tRNA (guanosine(18)-2'-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRM3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000000 (this species only)
Orthogroup (gene family)OG0000044 (this species only)
Orthogroup (gene family)OG0003448 (this species only)
Orthogroup (gene family)OG0005153 (this species only)
Orthogroup (gene family)OG0019275 (this species only)
Orthogroup (gene family)OG0021356 (this species only)
Orthogroup (gene family)OG0029682 (this species only)
Orthogroup (gene family)OG0059515 (this species only)
Orthogroup (gene family)OG0080345 (this species only)
Orthogroup (gene family)OG0080637 (this species only)
Orthogroup (gene family)OG0171521 (this species only)
Orthogroup (gene family)OG0171572 (this species only)
Orthogroup (gene family)OG0172321 (this species only)
Orthogroup (gene family)OG0173769 (this species only)
Orthogroup (gene family)OG0174560 (this species only)
Ubiquitin familyE3|E3 activity RING|PHD · all ubiquitin genes in this species
Ubiquitin familyDUB|ULP|ULP · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628
all species →		PHDPHD-fingerDomainInterproscan
PF00588
all species →		SpoU_methylaseSpoU rRNA Methylase familyFamilyInterproscan
PF05380
all species →		Peptidase_A17Pao retrotransposon peptidase FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR019787
all species →		DomainZinc finger, PHD-fingerInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR003653
all species →		DomainUlp1 protease family, C-terminal catalytic domainInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR045330
all species →		FamilyProbable methyltransferase Trm3/TARBP1Interproscan
IPR029026
all species →		Homologous_superfamilytRNA (guanine-N1-)-methyltransferase, N-terminalInterproscan
IPR001537
all species →		DomaintRNA/rRNA methyltransferase, SpoU typeInterproscan
IPR044748
all species →		DomainTrm3/ TARBP1, C-terminalInterproscan
IPR029028
all species →		Homologous_superfamilyAlpha/beta knot methyltransferasesInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR008042
all species →		FamilyRetrotransposon, PaoInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR34718
all species →		PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR12029
all species →		RNA METHYLTRANSFERASEInterproscan
PTHR22955
all species →		RETROTRANSPOSONInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006508
all species →		Biological ProcessproteolysisInterproscan
GO:0008234
all species →		Molecular Functioncysteine-type peptidase activityInterproscan
GO:0016423
all species →		Molecular FunctiontRNA (guanine) methyltransferase activityInterproscan
GO:0030488
all species →		Biological ProcesstRNA methylationInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:0008173
all species →		Molecular FunctionRNA methyltransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15333TRM3, TARBP1; tRNA guanosine-2'-O-methyltransferaseEC:2.1.1.34
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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