Detailed information of g624.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_036186569.1, cytosolic carboxypeptidase 1 isoform X11 [Myotis myotis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q09M05Cytosolic carboxypeptidase 4 OS=Mus musculus OX=10090 GN=Agbl1 PE=1 SV=3
Q641K1Cytosolic carboxypeptidase 1 OS=Mus musculus OX=10090 GN=Agtpbp1 PE=1 SV=2
Q9UPW5Cytosolic carboxypeptidase 1 OS=Homo sapiens OX=9606 GN=AGTPBP1 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF03876SHS2_Rpb7-NSHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397DomainInterproscan
PF20784DUF5575_CDUF5575 C-terminal domainDomainInterproscan
PF21056ZSWIM1-3_RNaseH-likeZinc finger SWIM domain-containing protein 1/3, RNaseH-like domainDomainInterproscan
PF01217Clat_adaptor_sClathrin adaptor complex small chainDomainInterproscan
PF00928Adap_comp_subAdaptor complexes medium subunit familyFamilyInterproscan
PF00246Peptidase_M14Zinc carboxypeptidaseDomainInterproscan
PF04855SNF5SNF5 / SMARCB1 / INI1FamilyInterproscan
PF21459INI1_DNA-bdSWI/SNF Subunit INI1, DNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR036250Homologous_superfamilyAcyl-CoA dehydrogenase-like, C-terminalInterproscan
IPR012258FamilyAcyl-CoA oxidaseInterproscan
IPR046373Homologous_superfamilyAcyl-CoA oxidase/dehydrogenase, middle domain superfamilyInterproscan
IPR009100Homologous_superfamilyAcyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamilyInterproscan
IPR045113FamilyRNA polymerase subunit Rpb7-likeInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR036898Homologous_superfamilyRNA polymerase Rpb7-like, N-terminal domain superfamilyInterproscan
IPR005576DomainRNA polymerase Rpb7-like , N-terminalInterproscan
IPR049218DomainDUF5575, C-terminal domainInterproscan
IPR048324DomainZSWIM1/3, RNaseH-like domainInterproscan
IPR052579FamilyZinc finger SWIM domain-containing proteinInterproscan
IPR001392FamilyClathrin adaptor, mu subunitInterproscan
IPR050431FamilyAdaptor complexes medium subunitInterproscan
IPR022775DomainAP complex, mu/sigma subunitInterproscan
IPR018240Conserved_siteClathrin adaptor, mu subunit, conserved siteInterproscan
IPR028565DomainMu homology domainInterproscan
IPR011012Homologous_superfamilyLongin-like domain superfamilyInterproscan
IPR036168Homologous_superfamilyAP-2 complex subunit mu, C-terminal superfamilyInterproscan
IPR000834DomainPeptidase M14, carboxypeptidase AInterproscan
IPR050821FamilyCytosolic carboxypeptidaseInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR000299DomainFERM domainInterproscan
IPR029704FamilySTEEP-likeInterproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR006939FamilySNF5/SMARCB1/INI1Interproscan
IPR048664DomainSWI/SNF Subunit INI1, DNA binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47331PHD-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR33332REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10909ELECTRON TRANSPORT OXIDOREDUCTASEInterproscan
PTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIInterproscan
PTHR31569SWIM-TYPE DOMAIN-CONTAINING PROTEINInterproscan
PTHR10529AP COMPLEX SUBUNIT MUInterproscan
PTHR12756CYTOSOLIC CARBOXYPEPTIDASEInterproscan
PTHR46355UPF0428 PROTEIN CXORF56Interproscan
PTHR10019SNF5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016627Molecular Functionoxidoreductase activity, acting on the CH-CH group of donorsInterproscan
GO:0003997Molecular Functionacyl-CoA oxidase activityInterproscan
GO:0005504Molecular Functionfatty acid bindingInterproscan
GO:0005777Cellular ComponentperoxisomeInterproscan
GO:0006631Biological Processfatty acid metabolic processInterproscan
GO:0016402Molecular Functionpristanoyl-CoA oxidase activityInterproscan
GO:0033540Biological Processfatty acid beta-oxidation using acyl-CoA oxidaseInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0055088Biological Processlipid homeostasisInterproscan
GO:0071949Molecular FunctionFAD bindingInterproscan
GO:0000291Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolyticInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan
GO:0006352Biological ProcessDNA-templated transcription initiationInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0031369Molecular Functiontranslation initiation factor bindingInterproscan
GO:0045948Biological Processpositive regulation of translational initiationInterproscan
GO:0060213Biological Processpositive regulation of nuclear-transcribed mRNA poly(A) tail shorteningInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030131Cellular Componentclathrin adaptor complexInterproscan
GO:0030136Cellular Componentclathrin-coated vesicleInterproscan
GO:0031410Cellular Componentcytoplasmic vesicleInterproscan
GO:0035615Molecular Functionclathrin adaptor activityInterproscan
GO:0004181Molecular Functionmetallocarboxypeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0035610Biological Processprotein side chain deglutamylationInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0006888Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0090158Biological Processendoplasmic reticulum membrane organizationInterproscan
GO:0000228Cellular Componentnuclear chromosomeInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0003713Molecular Functiontranscription coactivator activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0035060Cellular Componentbrahma complexInterproscan
GO:0071564Cellular ComponentnpBAF complexInterproscan
GO:0071565Cellular ComponentnBAF complexInterproscan
GO:1900461Biological Processpositive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoterInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K25304RPC9, CRCP; DNA-directed RNA polymerase III subunit RPC9-Peptidases and inhibitorsko01002deepkoala
Membrane traffickingko04131deepkoala
Transcription machineryko03021deepkoala

TOP