Gene detail

Detailed information of g6242.t1 in Montipora capitata

Genomic Location: Sc0000131:509322...515585
NR annotation: XP_029193153.1, 40S ribosomal protein SA-like [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7RKS5	Small ribosomal subunit protein uS2 OS=Nematostella vectensis OX=45351 GN=v1g198553 PE=3 SV=1
Q6P8D1	Small ribosomal subunit protein uS2 OS=Xenopus tropicalis OX=8364 GN=rpsa PE=2 SV=1
P38983	Small ribosomal subunit protein uS2 OS=Rattus norvegicus OX=10116 GN=Rpsa PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007673 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16122 all species →	40S_SA_C	40S ribosomal protein SA C-terminus	Family	Interproscan
PF00318 all species →	Ribosomal_S2	Ribosomal protein S2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032281 all species →	Domain	Small ribosomal subunit protein uS2, C-terminal domain	Interproscan
IPR018130 all species →	Conserved_site	Small ribosomal subunit protein uS2, conserved site	Interproscan
IPR027498 all species →	Family	Small ribosomal subunit protein uS2, eukaryotic	Interproscan
IPR005707 all species →	Family	Small ribosomal subunit protein uS2, eukaryotic/archaeal	Interproscan
IPR001865 all species →	Family	Small ribosomal subunit protein uS2	Interproscan
IPR023591 all species →	Homologous_superfamily	Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11489 all species →	40S RIBOSOMAL PROTEIN SA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02998	RP-SAe, RPSA; small subunit ribosomal protein SAe	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.