Gene detail

Detailed information of g6288.t1 in Montipora capitata

Genomic Location: Sc0000133:79969...118581
NR annotation: XP_015767865.1, PREDICTED: PH and SEC7 domain-containing protein 1-like isoform X1 [Acropora digitifera]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6288.t1

atggcacacgatagatatgtagaacttgaaagacatcctctcggtggttttggttttagtatcattggtggagttgacactcatcttcctcctatggtctgtgccttagtgcacaatggctccgcacaactgagtgggaaggttttcgctggggatgtaatactggaagttaatggtcagcctgttacccatttcaccacaaaccaagttgttgaaagtattcgcaacacacaggataacttaagactccgactgagggatgacccaggtacaagggaacgtgcccggccatacctcagaaaatttacagtagcagatcccaaactagctatttgccaggcaagagttaaaaggtctgcctcagctccaaattatccacggagccgcacactcaccaatcaattgcccagaaagggtattataaggttcaaggaggagaaaaatatgcacaagggacatagtacaagctcagaagacatgaaatctttggggcagatgagtctattaggactagatgaaggtgttaagggaatttttacaaggagaaatgatgatgttattgagcgggtgataacagactttccagtacacaacaattctacttcaagcagaactgatgaactttacagacctgaatgtttcaagggagggagtgtttctgatgacatgattaccacaagtccagagtctacacacaagacctgcataaactgtgggcagttaatacatctttcaattgactcttattctaatgcatccactgattcagcaacaaatgttaagcttacatgtaaaaagtgtggatatggttggaattattcctctggagggacaaacctccctggaacaccttattcagcacatcgaacattacaaccatcaacttctggcttacattctacacaaagtgcacaattacctggtaaagtcaatggtaacatgaatcatacaaatggacctgcacaggggccagaagacagtgaacgctattttcttaataatagagatctgtcaaatgaaggaaaagctgttttaaatggtggtattagatctgaagtaccagtattttttaattcaccttctgaagggctacctcctgattctagtgggagatacttcacagacttgctttatgaaagtccaagtgctttggcacagaggttgtttaacttggaaggatttgacagagaggaagttgcacctgaacttagtaaaaatactccttatggaaagttagtggctatagaataccttaaattctttgactttagccaagagggtatcacacaatcacttcaaaagtttctcaaagcttttcacttgagtggagaaactcaggagagagaaagaatcttaattcctttttcaagaagatatcaggaatgcaacaatcctgattatgggtcagaagatgcaacacacacgttggtgtgtgctatccttttgctcaactctgaccttcatggtgagaatcttcataagaagatgactcaaccacagttcatagaaaacttatcaggactatgtgatggaaaggacttcccaaaagacctactcaagggaatttatcaggaaatcaagagtaagccactagagggatttagttgtagagaaaaagtaccaacgccctctccatccaagagaacgctcacgcccaatagttccaagggaagctctctgggaaatccattcatagagattcaagcgagtgattctgataaggtctataaagaaggattgttgtatcgaaaggtcaccatgagctcagagggaaagaaaacttcagcttggaaaaggaaatggatgccattctttgccaccctgaaaggaatgatactgtttcttcacaagtctgatgaagttaccagcccagaaaatactaggcactgtttaggtgtacatcattctttggccagtcgagcgacagactacatcaagagaccatttgtgttcagatttgtcacttcagattggagagagttcctctttcaaggaaagaatcttcgagatatgaatgactggattgaagccatcaatcttgttgctgccacatattcctctccaccgttgcctgctcctgttggttcatgcaaaaggttccagaggcctgtaatgccattttcccgcacacagttacctctgactaaacaattggaacatcatgaaaagaggagtaaagaggctgaagagcaactaattgaaagtctacagaacaaaccaactagtgctacaggcagagagttggaagagtggcaggagaaacatgaattctttgagtatgagtacaaaagatacaagatgtatgttaatgtactccgtgcatcaaagctggagagcaaattgcgtgacaagccacgtggtgcagacaggtctgttgactctatcatgttacagatgaagcgctcttgttccttgggtgatttagatcttagcagtcgctataaaggaagaaatgggcgagagagctactttctcgcaatttacaaggaatga

Transcript

g6288.t1

ATGGCACACGATAGATATGTAGAACTTGAAAGACATCCTCTCGGTGGTTTTGGTTTTAGTATCATTGGTGGAGTTGACACTCATCTTCCTCCTATGGTCTGTGCCTTAGTGCACAATGGCTCCGCACAACTGAGTGGGAAGGTTTTCGCTGGGGATGTAATACTGGAAGTTAATGGTCAGCCTGTTACCCATTTCACCACAAACCAAGTTGTTGAAAGTATTCGCAACACACAGGATAACTTAAGACTCCGACTGAGGGATGACCCAGGTACAAGGGAACGTGCCCGGCCATACCTCAGAAAATTTACAGTAGCAGATCCCAAACTAGCTATTTGCCAGGCAAGAGTTAAAAGGTCTGCCTCAGCTCCAAATTATCCACGGAGCCGCACACTCACCAATCAATTGCCCAGAAAGGGTATTATAAGGTTCAAGGAGGAGAAAAATATGCACAAGGGACATAGTACAAGCTCAGAAGACATGAAATCTTTGGGGCAGATGAGTCTATTAGGACTAGATGAAGGTGTTAAGGGAATTTTTACAAGGAGAAATGATGATGTTATTGAGCGGGTGATAACAGACTTTCCAGTACACAACAATTCTACTTCAAGCAGAACTGATGAACTTTACAGACCTGAATGTTTCAAGGGAGGGAGTGTTTCTGATGACATGATTACCACAAGTCCAGAGTCTACACACAAGACCTGCATAAACTGTGGGCAGTTAATACATCTTTCAATTGACTCTTATTCTAATGCATCCACTGATTCAGCAACAAATGTTAAGCTTACATGTAAAAAGTGTGGATATGGTTGGAATTATTCCTCTGGAGGGACAAACCTCCCTGGAACACCTTATTCAGCACATCGAACATTACAACCATCAACTTCTGGCTTACATTCTACACAAAGTGCACAATTACCTGGTAAAGTCAATGGTAACATGAATCATACAAATGGACCTGCACAGGGGCCAGAAGACAGTGAACGCTATTTTCTTAATAATAGAGATCTgtcaaatgaaggaaaagcTGTTTTAAATGGTGGTATTAGATCTGAAGTACCAGTATTTTTTAATTCACCTTCTGAAGGGCTACCTCCTGATTCTAGTGGGAGATACTTCACAGACTTGCTTTATGAAAGTCCAAGTGCTTTGGCACAGAGGTTGTTTAACTTGGAAGGATTTGACAGAGAGGAAGTTGCACCTGAACTTAGTAAAAATACTCCTTATGGAAAGTTAGTGGCTATAGAATACCTTAAATTCTTTGACTTTAGCCAAGAGGGTATCACACAATCACTTCAAAAGTTTCTCAAAGCTTTTCACTTGAGTGGAGAAACTCAGGAGAGAGAAAGAATCTTAATTCCTTTTTCAAGAAGATATCAGGAATGCAACAATCCTGATTATGGGTCAGAAgATGCAACACACACGTTGGTGTGTGCTATCCTTTTGCTCAACTCTGACCTTCATGGTGAGAATCTTCATAAGAAGATGACTCAACCACAGTTCATAGAAAACTTATCAGGACTATGTGATGGAAAGGACTTCCCAAAAGACCTACTCAAGGGAATTTATCAGGAAATCAAGAGTAAGCCACTAGAGGGATTTAGTTGTAGAGAAAAAGTACCAACGCCCTCTCCATCCAAGAGAACGCTCACGCCCAATAGTTCCAAGgGAAGCTCTCTGGGAAATCCATTCATAGAGATTCAAGCGAGTGATTCTGATAAGGTCTATAAAGAAGGATTGTTGTATCGAAAGGTCACCATGAGCTCAGAGGGAAAGAAAACTTCAGCTTGGAAAAGGAAATGGATGCCATTCTTTGCCACCCTGAAAGGAATGATACTGTTTCTTCACAAGTCTGATGAAGTTACCAGCCCAGAAAATACTAGGCACTGTTTAGGTGTACATCATTCTTTGGCCAGTCGAGCGACAGACTACATCAAGAGACCATTTGTGTTCAGATTTGTCACTTCAGATTGGAGAGAGTTCCTCTTTCAAGGAAAGAATCTTCGAGATATGAATGACTGGATTGAAGCCATCAATCTTGTTGCTGCCACATATTCCTCTCCACCGTTGCCTGCTCCTGTTGGTTCATGCAAAAGGTTCCAGAGGCCTGTAATGCCATTTTCCCGCACACAGTTACCTCTGACTAAACAATTGGAACATCATGAAAAGAGGAGTAAAGAGGCTGAAGAGCAACTAATTGAAAGTCTACAGAACAAACCAACTAGTGCTACAGGCAGAGAGTTGGAAGAGTGGCAGGAGAAACATGAATTCTTTGAGTATGAGTACAAAAGATACAAGATGTATGTTAATGTACTCCGTGCATCAAagctggagagcaaattgcgtGACAAGCCACGTGGTGCAGACAGGTCTGTTGACTCTATCATGTTACAGATGAAGCGCTCTTGTTCCTTGGGTGATTTAGATCTTAGCAGTCGCTATAAAGGAAGAAATGGGCGAGAGAGCTACTTTCTCGCAATTTACAAGGAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NYI0	PH and SEC7 domain-containing protein 3 OS=Homo sapiens OX=9606 GN=PSD3 PE=1 SV=2
Q2PFD7	PH and SEC7 domain-containing protein 3 OS=Mus musculus OX=10090 GN=Psd3 PE=1 SV=2
Q9ESQ7	PH and SEC7 domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Psd PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003155 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15410 all species →	PH_9	Pleckstrin homology domain	Domain	Interproscan
PF01369 all species →	Sec7	Sec7 domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041681 all species →	Domain	Pleckstrin homology domain 9	Interproscan
IPR000904 all species →	Domain	Sec7 domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR001605 all species →	Domain	Pleckstrin homology domain, spectrin-type	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR035999 all species →	Homologous_superfamily	Sec7 domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR023394 all species →	Homologous_superfamily	Sec7, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10663 all species →	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0032012 all species →	Biological Process	regulation of ARF protein signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g6288.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.