Gene detail

Detailed information of g63.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_027038198.1, tyrosine--tRNA ligase, cytoplasmic-like [Pocillopora damicornis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZJ08	Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus OX=9031 GN=YARS1 PE=2 SV=1
Q6TGS6	Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio OX=7955 GN=yars1 PE=2 SV=2
Q5R8T5	Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=YARS1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000002 (this species only)
Orthogroup (gene family)	OG0000155 (this species only)
Orthogroup (gene family)	OG0000482 (this species only)
Orthogroup (gene family)	OG0000556 (this species only)
Orthogroup (gene family)	OG0000944 (this species only)
Orthogroup (gene family)	OG0001647 (this species only)
Orthogroup (gene family)	OG0003687 (this species only)
Orthogroup (gene family)	OG0006282 (this species only)
Orthogroup (gene family)	OG0009302 (this species only)
Orthogroup (gene family)	OG0014419 (this species only)
Orthogroup (gene family)	OG0036211 (this species only)
Orthogroup (gene family)	OG0170967 (this species only)
Orthogroup (gene family)	OG0171137 (this species only)
Orthogroup (gene family)	OG0171587 (this species only)
Orthogroup (gene family)	OG0173683 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03184 all species →	DDE_1	DDE superfamily endonuclease	Family	Interproscan
PF02460 all species →	Patched	Patched family	Family	Interproscan
PF11303 all species →	DUF3105	Protein of unknown function (DUF3105)	Family	Interproscan
PF04969 all species →	CS	CS domain	Domain	Interproscan
PF04968 all species →	CHORD	CHORD	Family	Interproscan
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan
PF00092 all species →	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF08685 all species →	GON	GON domain	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF12874 all species →	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004875 all species →	Domain	DDE superfamily endonuclease domain	Interproscan
IPR000731 all species →	Domain	Sterol-sensing domain	Interproscan
IPR003392 all species →	Family	Protein patched/dispatched	Interproscan
IPR051697 all species →	Family	Patched domain-containing protein	Interproscan
IPR021454 all species →	Family	Protein of unknown function DUF3105	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR007051 all species →	Domain	CHORD domain	Interproscan
IPR007052 all species →	Domain	CS domain	Interproscan
IPR008978 all species →	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR002307 all species →	Family	Tyrosine-tRNA ligase	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR037800 all species →	Family	Histone acetyltransferase GCN5	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR050653 all species →	Family	Protease Inhibitors and Growth Factor Antagonists	Interproscan
IPR012314 all species →	Domain	Peptidase M12B, GON-ADAMTSs	Interproscan
IPR003645 all species →	Domain	Follistatin-like, N-terminal	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050589 all species →	Family	Ikaros C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10796 all species →	PATCHED-RELATED	Interproscan
PTHR34179 all species →	TUMOR PROTEIN P53-INDUCIBLE PROTEIN 13	Interproscan
PTHR46983 all species →	CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR45750 all species →	GH11602P	Interproscan
PTHR10913 all species →	FOLLISTATIN-RELATED	Interproscan
PTHR24404 all species →	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004831 all species →	Molecular Function	tyrosine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006437 all species →	Biological Process	tyrosyl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0010484 all species →	Molecular Function	histone H3 acetyltransferase activity	Interproscan
GO:0043966 all species →	Biological Process	obsolete histone H3 acetylation	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0140672 all species →	Cellular Component	ATAC complex	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24682	PTCHD; patched domain-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.