Detailed information of g63.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_027038198.1, tyrosine--tRNA ligase, cytoplasmic-like [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5ZJ08Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus OX=9031 GN=YARS1 PE=2 SV=1
Q6TGS6Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio OX=7955 GN=yars1 PE=2 SV=2
Q5R8T5Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=YARS1 PE=2 SV=3
Gene familySubfamily
Transcription Factors Familyzf-C2H2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF02460PatchedPatched familyFamilyInterproscan
PF11303DUF3105Protein of unknown function (DUF3105)FamilyInterproscan
PF04969CSCS domainDomainInterproscan
PF04968CHORDCHORD FamilyInterproscan
PF00579tRNA-synt_1btRNA synthetases class I (W and Y)FamilyInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF00583Acetyltransf_1Acetyltransferase (GNAT) familyFamilyInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF07648Kazal_2Kazal-type serine protease inhibitor domainDomainInterproscan
PF08685GONGON domainDomainInterproscan
PF00096zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF12874zf-metZinc-finger of C2H2 typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR000731DomainSterol-sensing domainInterproscan
IPR003392FamilyProtein patched/dispatchedInterproscan
IPR051697FamilyPatched domain-containing proteinInterproscan
IPR021454FamilyProtein of unknown function DUF3105Interproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR007051DomainCHORD domainInterproscan
IPR007052DomainCS domainInterproscan
IPR008978Homologous_superfamilyHSP20-like chaperoneInterproscan
IPR002307FamilyTyrosine-tRNA ligaseInterproscan
IPR002305FamilyAminoacyl-tRNA synthetase, class IcInterproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR037800FamilyHistone acetyltransferase GCN5Interproscan
IPR016181Homologous_superfamilyAcyl-CoA N-acyltransferaseInterproscan
IPR000182DomainGNAT domainInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR002350DomainKazal domainInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR036058Homologous_superfamilyKazal domain superfamilyInterproscan
IPR050653FamilyProtease Inhibitors and Growth Factor AntagonistsInterproscan
IPR012314DomainPeptidase M12B, GON-ADAMTSsInterproscan
IPR003645DomainFollistatin-like, N-terminalInterproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR050589FamilyIkaros C2H2-type zinc-fingerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10796PATCHED-RELATEDInterproscan
PTHR34179TUMOR PROTEIN P53-INDUCIBLE PROTEIN 13Interproscan
PTHR46983CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR45750GH11602PInterproscan
PTHR10913FOLLISTATIN-RELATEDInterproscan
PTHR24404ZINC FINGER PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0004831Molecular Functiontyrosine-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006437Biological Processtyrosyl-tRNA aminoacylationInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0006418Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0000123Cellular Componenthistone acetyltransferase complexInterproscan
GO:0004402Molecular Functionhistone acetyltransferase activityInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0010484Molecular Functionhistone H3 acetyltransferase activityInterproscan
GO:0043966Biological Processobsolete histone H3 acetylationInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0140672Cellular ComponentATAC complexInterproscan
GO:0016747Molecular Functionacyltransferase activity, transferring groups other than amino-acyl groupsInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007275Biological Processmulticellular organism developmentInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0004222Molecular Functionmetalloendopeptidase activityInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K24682PTCHD; patched domain-containing protein-Domain-containing proteins not elsewhere classifiedko04990deepkoala

TOP