Detailed information of g632.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAA72534.1, Cn-ems protein [Hydractinia symbiolongicarpus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P18488Homeotic protein empty spiracles OS=Drosophila melanogaster OX=7227 GN=ems PE=2 SV=2
Q804S6Homeobox protein EMX1 OS=Danio rerio OX=7955 GN=emx1 PE=2 SV=1
Q6GLB9Homeobox protein EMX1 OS=Xenopus tropicalis OX=8364 GN=emx1 PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyHomeobox
Transcription Factors FamilyHMG

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12047DNMT1-RFDCytosine specific DNA methyltransferase replication foci domainDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF21262RRP40_S1Exosome complex component RRP40, S1 domainDomainInterproscan
PF15985KH_6KH domainDomainInterproscan
PF00046HomeodomainHomeodomainDomainInterproscan
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF00168C2C2 domainDomainInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022702DomainDNA (cytosine-5)-methyltransferase 1, replication foci domainInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR051070FamilyNF-kappa-B InhibitorInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR026699FamilyExosome complex RNA-binding protein 1/RRP40/RRP4Interproscan
IPR049469DomainExosome complex component RRP40, type I KH domainInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR036612Homologous_superfamilyK Homology domain, type 1 superfamilyInterproscan
IPR037319DomainRrp40, S1 domainInterproscan
IPR004088DomainK Homology domain, type 1Interproscan
IPR001356DomainHomeobox domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR017970Conserved_siteHomeobox, conserved siteInterproscan
IPR020479DomainHomeobox domain, metazoaInterproscan
IPR050877FamilyEMX/VAX/Noto Homeobox Transcription FactorsInterproscan
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR052412FamilyCell Cycle and Developmental Transcription RegulatorsInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan
IPR000008DomainC2 domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46680NF-KAPPA-B INHIBITOR ALPHAInterproscan
PTHR21321PNAS-3 RELATEDInterproscan
PTHR24339HOMEOBOX PROTEIN EMX-RELATEDInterproscan
PTHR13059HMG-BOX TRANSCRIPTION FACTOR BBXInterproscan
PTHR10024SYNAPTOTAGMINInterproscan
PTHR38681RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000178Cellular Componentexosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0034427Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034475Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0043928Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071034Biological ProcessCUT catabolic processInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071051Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0007417Biological Processcentral nervous system developmentInterproscan
GO:0030182Biological Processneuron differentiationInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000149Molecular FunctionSNARE bindingInterproscan
GO:0001786Molecular Functionphosphatidylserine bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005544Molecular Functioncalcium-dependent phospholipid bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0014059Biological Processregulation of dopamine secretionInterproscan
GO:0017156Biological Processcalcium-ion regulated exocytosisInterproscan
GO:0017158Biological Processregulation of calcium ion-dependent exocytosisInterproscan
GO:0030276Molecular Functionclathrin bindingInterproscan
GO:0070382Cellular Componentexocytic vesicleInterproscan
GO:0071277Biological Processcellular response to calcium ionInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02894RP-L23e, RPL23; large subunit ribosomal protein L23e-Messenger RNA biogenesisko03019deepkoala
Ribosomeko03011deepkoala

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