Gene detail

Detailed information of g6325.t1 in Acropora digitifera

Genomic Location: chr3Alt:16827432...16830879
NR annotation: XP_015774982.1, PREDICTED: AN1-type zinc finger protein 6-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6FIF0	AN1-type zinc finger protein 6 OS=Homo sapiens OX=9606 GN=ZFAND6 PE=1 SV=2
Q5R7S6	AN1-type zinc finger protein 6 OS=Pongo abelii OX=9601 GN=ZFAND6 PE=2 SV=1
Q3SZY7	AN1-type zinc finger protein 6 OS=Bos taurus OX=9913 GN=ZFAND6 PE=2 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|ZnF\|ZnF_A20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01428 all species →	zf-AN1	AN1-like Zinc finger	Family	Interproscan
PF01754 all species →	zf-A20	A20-like zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050652 all species →	Family	AN1/A20 Zinc Finger	Interproscan
IPR002653 all species →	Domain	Zinc finger, A20-type	Interproscan
IPR035896 all species →	Homologous_superfamily	AN1-like Zinc finger	Interproscan
IPR000058 all species →	Domain	Zinc finger, AN1-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10634 all species →	AN1-TYPE ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g6325.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6325.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

232.1Max TPM

168.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	168.82	232.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	232.14
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	221.30
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	212.05
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	207.98
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	204.53
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	202.66
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	187.97
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	186.39
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	179.20
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	177.92
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	177.86
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	177.51
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	175.65
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	175.21
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	170.74
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	170.30
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	168.46
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	167.49
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	166.09
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	165.67
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	164.28
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	163.08
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	162.53
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	159.13
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	155.57
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	155.40
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	155.32
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	154.16
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	151.74
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	151.13
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	150.61
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	148.93
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	148.30
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	144.93
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	144.37
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	140.52
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	140.09
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	135.51
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	131.11

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.