Gene detail

Detailed information of g6326.t1 in Montipora capitata

Genomic Location: Sc0000134:190487...208048
NR annotation: XP_029190766.2, eukaryotic translation initiation factor 4E transporter-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6326.t1

atggaggtcagcgagttgtcagaagggtgtacagatgtcgttgccaaagaagggtttccttgcgaagggaaaattgtcaatagtgacaacaccttgactttatcggggaaaaaggatgagaatggagcaagcgaaaaccagccacgtgttacatacacgaaggaggatttgttaaatctgagggagtcaccagcatccaaactgtggccttctattctttctgatgaatatgtaagaaatggaatttgggatccagaagcatggcatcagtcatattcaagtgagaagagatgtgcatcacctggcgaggaactgaaaaaacacctactggtggttgaagatggtatagtgcttagtcctcagcgacagagttttgttcagggttgtcatattcctcagagtgcacctgagaagcatctgttacaggaaagaggaaaaatcagcagaacaactgaccgggaaaatgatggaagaagcaggcttactggacgggttgggagaggaagaacattggattataaagagcgtacacctttaaaagaaaaggataaggactctgatgatccattgggtaaatattttgggacacgagaaagagcagaaaggattgacacaataagaggatctggcaaggacaaagagaagggaattaaaggaagagaaaaggaacgaagaagaagcagagaggaacaagctcgtggcaaaaatacccaagttaaaaagaaacaaggtaaagatgagaggaaggacgaacctgagtggttcacatttggcccatcaagtcagtttgaaactatggaacttaaagggtttgatgactcccaagattttaagaaagatcaggagagacgtaaatctgtgtctgatgagattaaagcaattttgtcagttgggaagaaaggactgttaaatggtgaagtgaacacttcatcccctgaaacaagtcgaagtgcatctcaaaacagtgattcagaaaagaagataccagatgctgagggcacagctccagatcacaataacctcaaagccaagccctttgacattaatgacttctttcttagtgacaccttgctacctttgactggaggggtggaccagacaagtagcagattttgtcagttttttggtcaaccaggaagcaactacagcagcagccgaagtggaagtgcagggttttccagtggtggtgcagatactccaggtacaccctcgcctggaccgaactatttctttactcctataacacctccaatggatgatggcactgaatccgaaagcttgtcgaacatgctccaaaagacccaggtcagtgttcagccacttttagatgaggttatgtcgtcaggaaaggagaaagggaaagtcatgggttctgtgcgtttagaggatattgaagcagatgtgaaaacagacagcaaagtcccgaccaagaaagagttgatcgaccaggaggaggaaaataaagaagacatcggtaatggtgttgaaataacagatactcctgagcagatggatgcatttaacaagcttgtccagaagatgaagtcatcaggcaccctacccgagaaaccgcaaccggcaatctctggtctgccgactcatttactgccaagacccccatcacccaaaaggaaaacgccaaggaattctccatcgccagtcctggatttaaggagatccccatcaccgactgatctactaaaactaatgaccatgcaggcaccattttctgaccaccgaccgccatcaccagcccaagtggtgccacagatgaacagagcttcatctcctttggaaatgttccagaaattcaattctatagttacctctccacaagatttttttgcgtctccgtcgctggggaggtcatcctctctccatgctgcacgagcacaacacagaggtagccctcctcttggatttcgtggcggtaacttgcagctggttccacaccaaggtacaccttccttcaaaacacgaccactacctgatggtgtaccacaccgggcagtgcaacagtctacaaggaacccacttgagaggcaagcttctgaaagaaatacttctgaaaagcgcagctcagtacctgtgtattcaaaatcggcgtcctctcagtccagtagtccatacataccggacagatcttttatgccaacatctgttatgagaaagatccagcaggatcgcatggatcaaaaaccccacaagactgaggagaaaacacaggccttggattcttcgaaagaaataagcgttgttgacaaaactgactctccttcttcagggactgtaccccagaggttattcactgaacaagagtcgtctgaactgagagcccagtcacaatctgaaggtgatttgataagaggcgcactgtttgcacagtacaccatgacagatgaaaaactgactccatctcaaatgagtgacttaaaacaaggcattttactttcttcaacatcggctcctggttcaccgccgttgcagaagcctactgcctttaaacccttgccaggatctcctcaggttccgttctccagtcttaacattggcattcactctgaacctgcatcccctatgcgtgcatttacacaaagggcttcttcgacgctacctaattcagccccttgcactccacagcgacatcctttagttgacaaagctgctttgctttcgccgcatcagttgtttgcacggaaagactgtaacaagccttccgttggactgttcgggcccagtatttcgctcgaaagccatgttaaaaatgttcgtggtggcataaccaaagttgtggcagccaatgaaggtagacctctaactcattcttatgagcagcaggctcaagtaccaccagacaagatgccttcatacgaagacgcattcccagggaaaagaagtgaaattttgttgggaaatcattcagtttttaaaggtggctcaactaccactggtgaacaaaagaaggccggcagcaacgaagtgacagcgcagcatgagggtttggctccgaatcatccaagaaaaagaattcttggagatgcaaggcccacaccggttcaccatgtcccgcgaccatctcatgggccccatggaatgtggtcaggttcacacttaccaaatggacaattattctcaccgtcaataatatcaacaatgcaggggcatccggggcgcacgccttttaattctcctatgcaaaatatggggatgtcacctcggcctggtttgcatccagggatgatgccccctcgtgtccatccagggtacttgaggatgatgtcgtcagcctccactccaatgggaataccttctcctggaatggctcctgcatcctcgagaatgcagatgctccactcaactggcaggatccctgctgtgccagggcactatccagccatgatgttttccgggcgtcccatacctggttacccacctggtaaccccgctgctgcagtggtagcagcatcaatgacgggaactcgttcccctcacattcccttgcattccggtggacaacaaatccatggaagacgagcggccagcccagccgtgaatcacccaccacaaagtcgatcccctgttggagggggaaacatcttgtccaaatggttcagcgatgacattttacagcaggcaaaccctggacagcgatcaaccacgcctgactttgccaaaaaggtggtgtcggttgaagaactggagcgcctacaggccgcggctatcaattga

Transcript

g6326.t1

ATGGAGGTCAGCGAGTTGTCAGAAGGGTGTACAGATGTCGTTGCCAAAGAAGGGTTTCCTTGCGAAGGGAAAATTGTCAATAGTGACAACACCTTGACTTTATCGGGGAAAAAGGATGAGAATGGAGCAAGCGAAAACCAGCCACGTGTTACATACACGAAGGAGGATTTGTTAAATCTGAGGGAGTCACCAGCATCCAAACTGTGGCCTTCTATTCTTTCTGATGAATATGTAAGAAATGGAATTTGGGATCCAGAAGCATGGCATCAGTCATATTCAAGTGAGAAGAGATGTGCATCACCTGGCGAGGAACTGAAAAAACACCTACTGGTGGTTGAAGATGGTATAGTGCTTAGTCCTCAGCGACAGAGTTTTGTTCAGGGTTGTCATATTCCTCAGAGTGCACCTGAGAAGCATCTGTTACAGGAAAGAGGAAAAATCAGCAGAACAACTGACCGGGAAAATGATGGAAGAAGCAGGCTTACTGGACGGGTTGGGAGAGGAAGAACATTGGATTATAAAGAGCGTACacctttaaaagaaaaggataaGGACTCTGATGATCCATTGGGTAAATATTTTGGGACACGAGAAAGAGCAGAAAGGATTGACACAATAAGAGGATCTGGCAAGGACAAAGAGAAGGGAATTAAAGGAAGAGAAAAGGAACGAAGAAGAAGCAGAGAGGAACAAGCTCGTGGCAAAAATACCCAAGTTAAAAAGAAACAAGGTAAAGATGAGAGGAAGGACGAACCTGAGTGGTTCACATTTGGCCCATCAAGTCAGTTTGAAACTATGGAACTTAAAGGGTTTGATGACTCCCAAGATTTTAAGAAAGATCAGGAGAGACGTAAATCTGTGTCTGATGAGATTAAAGCAATTTTGTCAGTTGGGAAGAAAGGACTGTTAAATGGTGAAGTGAACACTTCATCCCCTGAAACAAGTCGAAGTGCATCTCAAAACAGTGATTCAGAAAAGAAGATACCAGATGCTGAGGGCACAGCTCCAGATCACAATAACCTCAAAGCCAAGCCCTTTGACATTAATGACTTCTTTCTTAGTGACACCTTGCTACCTTTGACTGGAGGGGTGGACCAGACAAGTAGCAGATTTTGTCAGTTTTTTGGTCAACCAGGAAGCAACTACAGCAGCAGCCGAAGTGGAAGTGCAGGGTTTTCCAGTGGTGGTGCAGATACTCCAGGTACACCCTCGCCTGGACCGAACTATTTCTTTACTCCTATAACACCTCCAATGGATGATGGCACTGAATCCGAAAGCTTGTCGAACATGCTCCAAAAGACCCAGGTCAGTGTTCAGCCACTTTTAGATGAGGTTATGTCGTCAGGAAAGGAGAAAGGGAAAGTCATGGGTTCTGTGCGTTTAGAGGATATTGAAGCAGATGTGAAAACAGACAGCAAAGTCCCGACCAAGAAAGAGTTGATCGACCAGGAGGAGGAAAATAAAGAAGACATCGGTAATGGTGTTGAAATAACAGATACTCCTGAGCAGATGGATGCATTTAACAAGCTTGTCCAGAAGATGAAGTCATCAGGCACCCTACCCGAGAAACCGCAACCGGCAATCTCTGGTCTGCCGACTCATTTACTGCCAAGACCCCCATCACCCAAAAGGAAAACGCCAAGGAATTCTCCATCGCCAGTCCTGGATTTAAGGAGATCCCCATCACCGACTGATCTACTAAAACTAATGACCATGCAGGCACCATTTTCTGACCACCGACCGCCATCACCAGCCCAAGTGGTGCCACAGATGAACAGAGCTTCATCTCCTTTGGAAATGTTCCAGAAATTCAATTCTATAGTTACCTCTCCACAAGATTTTTTTGCGTCTCCGTCGCTGGGGAGGTCATCCTCTCTCCATGCTGCACGAGCACAACACAGAGGTAGCCCTCCTCTTGGATTTCGTGGCGGTAACTTGCAGCTGGTTCCACACCAAGGTACACCTTCCTTCAAAACACGACCACTACCTGATGGTGTACCACACCGGGCAGTGCAACAGTCTACAAGGAACCCACTTGAGAGGCAAGCTTCTGAAAGAAATACTTCTGAAAAGCGCAGCTCAGTACCTGTGTATTCAAAATCGGCGTCCTCTCAGTCCAGTAGTCCATACATACCGGACAGATCTTTTATGCCAACATCTGTTATGAGAAAGATCCAGCAGGATCGCATGGATCAAAAACCCCACAAGACTGAGGAGAAAACACAGGCCTTGGATTCTTCGAAAGAAATAAGCGTTGTTGACAAAACTGACTCTCCTTCTTCAGGGACTGTACCCCAGAGGTTATTCACTGAACAAGAGTCGTCTGAACTGAGAGCCCAGTCACAATCTGAAGGTGATTTGATAAGAGGCGCACTGTTTGCACAGTACACCATGACAGATGAAAAACTGACTCCATCTCAAATGAGTGACTTAAAACAAGGCATTTTACTTTCTTCAACATCGGCTCCTGGTTCACCGCCGTTGCAGAAGCCTACTGCCTTTAAACCCTTGCCAGGATCTCCTCAGGTTCCGTTCTCCAGTCTTAACATTGGCATTCACTCTGAACCTGCATCCCCTATGCGTGCATTTACACAAAGGGCTTCTTCGACGCTACCTAATTCAGCCCCTTGCACTCCACAGCGACATCCTTTAGTTGACAAAGCTGCTTTGCTTTCGCCGCATCAGTTGTTTGCACGGAAAGACTGTAACAAGCCTTCCGTTGGACTGTTCGGGCCCAGTATTTCGCTCGAAAGCCATGTTAAAAATGTTCGTGGTGGCATAACCAAAGTTGTGGCAGCCAATGAAGGTAGACCTCTAACTCATTCTTATGAGCAGCAGGCTCAAGTACCACCAGACAAGATGCCTTCATACGAAGACGCATTCCCAGGGAAAAGAAGTGAAATTTTGTTGGGAAATCATTCAGTTTTTAAAGGTGGCTCAACTACCACTGGTGAACAAAAGAAGGCCGGCAGCAACGAAGTGACAGCGCAGCATGAGGGTTTGGCTCCGAATCATCCAAGAAAAAGAATTCTTGGAGATGCAAGGCCCACACCGGTTCACCATGTCCCGCGACCATCTCATGGGCCCCATGGAATGTGGTCAGGTTCACACTTACCAAATGGACAATTATTCTCACCGTCAATAATATCAACAATGCAGGGGCATCCGGGGCGCACGCCTTTTAATTCTCCTATGCAAAATATGGGGATGTCACCTCGGCCTGGTTTGCATCCAGGGATGATGCCCCCTCGTGTCCATCCAGGGTACTTGAGGATGATGTCGTCAGCCTCCACTCCAATGGGAATACCTTCTCCTGGAATGGCTCCTGCATCCTCGAGAATGCAGATGCTCCACTCAACTGGCAGGATCCCTGCTGTGCCAGGGCACTATCCAGCCATGATGTTTTCCGGGCGTCCCATACCTGGTTACCCACCTGGTAACCCCGCTGCTGCAGTGGTAGCAGCATCAATGACGGGAACTCGTTCCCCTCACATTCCCTTGCATTCCGGTGGACAACAAATCCATGGAAGACGAGcggCCAGCCCAGCCGTGAATCACCCACCACAAAGTCGATCCCCTGTTGGAGGGGGAAACATCTTGTCCAAATGGTTCAGCGATGACATTTTACAGCAGGCAAACCCTGGACAGCGATCAACCACGCCTGACTTTGCCAAAAAGGTGGTGTCGGTTGAAGAACTGGAGCGCCTACAGGCCGCGGCTATCAATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NRA8	Eukaryotic translation initiation factor 4E transporter OS=Homo sapiens OX=9606 GN=EIF4ENIF1 PE=1 SV=2
Q9EST3	Eukaryotic translation initiation factor 4E transporter OS=Mus musculus OX=10090 GN=Eif4enif1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003915 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10477 all species →	EIF4E-T	Nucleocytoplasmic shuttling protein for mRNA cap-binding EIF4E	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018862 all species →	Family	Eukaryotic translation initiation factor 4E binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12269 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18728	EIF4ENIF1; eukaryotic translation initiation factor 4E transporter	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6326.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

447.5Max TPM

178.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	164.81	393.93
whole organisms · low pH treatment	15	15	200.14	447.46
whole organisms · extra low pH treatment pH treatment	12	12	176.23	369.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	393.93
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	365.63
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	333.45
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	194.37
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	191.53
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	186.92
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	185.34
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	182.50
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	182.03
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	177.97
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	164.81
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	156.84
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	154.17
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	127.47
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	99.52
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	86.90
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	83.02
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	80.77
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	50.27
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	33.36
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	30.27
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	447.46
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	390.02
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	370.23
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	227.21
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	219.74
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	194.70
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	183.98
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	172.72
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	158.63
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	158.34
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	148.89
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	124.02
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	69.56
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	68.65
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	67.93
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	369.29
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	300.50
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	240.76
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	193.88
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	187.13
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	172.01
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	159.68
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	132.18
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	116.71
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	88.38
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	84.15
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	70.08

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.