Gene detail

Detailed information of g6335.t1 in Montipora capitata

Genomic Location: Sc0000134:360258...375487
NR annotation: XP_044169797.1, AP-1 complex subunit beta-1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6335.t1

atgacggattctaagtacttcactactacgaagaaaggggagatctttgagctcaaggcagagcttaacagtgacaagaaagaccgcaagaaagaagcagttaaaaaagtcatagcaagcatgactgttggaaaggatgtcagctccttgtttcctgatgtggtcaactgtatgcaaactgataatttggaattgaagaagttggtgtatctttacctgatgaattatgccaagtctcaaccagacatggccatcatggcggtcaatacctttgtcaaggattgtgaggacccaaaccctctcattcgtgcacttgctgtccgaaccatgggttgcatccgtgtcgacaagatcacagaatacttatgtgaaccccttcgcaagtgcctgaaggatgaagatccctatgtacgcaagacagcagcagtctgtgtggcaaagcttcatgacatcaattcacagttggttgaggatcaaggttttcttgactcgttgaaggacttgttgtctgattccaaccccatggttgtagcaaatgctgttgctgcactttctgaaattagtgatgcttctcccactgctgcagccatgatggagattaactcacagactataaacaaactgcttacagctctcaatgagtgtacagaatggggacagatctttattcttgattcactggcacagtacactccaaaagatgaccgtgaagcccagagtatttgtgaacgtgttacccccaggctctctcatgctaatgctgctgtagttctgtcagccgtcaaggttcttatgaagtacattgagattatgacaccttcctcaacctatgtgcagaacctcatcaagaaactgtctcctccacttgtaaccttgttgtcgagtgaacctgaggtccagtatgttgcacttaggaatataaacttgattgtgcagaaaagagctgacatcctcaagaatgaaatgaaagtgttctttgtgaagtataatgacccaatttatgtaaaacttgagaagttggacattatgatcagacttgcaaaccaacagaacattgctcaagtactagcagagttgaaagaatatgctactgaagttgatgtagattttgtcagaaagtcagtgcgtgctattggacgttgtgctatcaaggtcgagcaatctgctgaacgctgtgtgagcacattgttagacttgattcagaccaaagtcaattacgtggtacaagaagctattattgtcatcaaggatatcttcaggaagtaccctaacaaatatgagagtataatctccacattgtgtgagaacctggattccttagatgaacccgaggcaagagcatcaatgatttggattattggtgaatacgcagaaagaattgacaatgctgcagaattgctggagtcctttttggaaggcttccaagatgaaaattctcaggtgcaattgcagcttctgacatctattgtgaagctgtttttaaaacgcccaacagacacgcaggagttagtgcagcaggttctaagtttagcaacacaggacagtgacaatccagatctgagagacagggggtacatttactggagactgctgtcaactgatcctgttgctgcaaaggaagtagtattggcagaaaagccactgatatcagaggagacagatctcctggaaccaaccctgttggatgagctcatctgtaatatctcaacactagcatcagtctatcacaagccaccaagctcatttgtggaaggtcgcacagcggcaagaaggtttactttgcctccaagagctgagccaacgccaggagctgaaacggaggaagcagcgcctgctccccaaccagtggctgctcctgctgctcctccagctgctgctcccccttcagctgcaccatccactgactcgctgctgggggatcttctgatggacattggtccttcccaacctgtctctgctccaagtatggctgctactcagcaaggagctccaggtggtggtgtcatggatctgttgggagaagacttcagtggtttgcagcttggtggtggtccaagtcctgctccacctgccatgggaggaggtctaggtgatcttttcagcttatcaggaggagttggtatgccaggtggaatgtactcagctcctaaacaggtctggcttccagctgttaggggaaaaggagctgaagtatcaggtaatacaacattgatggcccttcagatcataggctaa

Transcript

g6335.t1

ATGACGGATTCTAAGTACTTCACTACTACGAAGAAAGGGGAGATCTTTGAGCTCAAGGCAGAGCTTAACAGTGACAAGAAAGACCGCAAGAAAGAAGCAGTTAAAAAAGTCATAGCAAGCATGACTGTTGGAAAGGATGTCAGCTCCTTGTTTCCTGATGTGGTCAACTGTATGCAAACTGATAATTTGGAATTGAAGAAGTTGGTGTATCTTTACCTGATGAATTATGCCAAGTCTCAACCAGACATGGCCATCATGGCGGTCAATACCTTTGTCAAGGATTGTGAGGACCCAAACCCTCTCATTCGTGCACTTGCTGTCCGAACCATGGGTTGCATCCGTGTCGACAAGATCACAGAATACTTATGTGAACCCCTTCGCAAGTGCCTGAAGGATGAAGATCCCTATGTACGCAAGACAGCAGCAGTCTGTGTGGCAAAGCTTCATGACATCAATTCACAGTTGGTTGAGGATCAAGGTTTTCTTGACTCGTTGAAGGACTTGTTGTCTGATTCCAACCCCATGGTTGTAGCAAATGCTGTTGCTGCACTTTCTGAAATTAGTGATGCTTCTCCCACTGCTGCAGCCATGATGGAGATTAACTCACAGACTATAAACAAACTGCTTACAGCTCTCAATGAGTGTACAGAATGGGGACAGATCTTTATTCTTGATTCACTGGCACAGTACACTCCAAAAGATGACCGTGAAGCCCAGAGTATTTGTGAACGTGTTACCCCCAGGCTCTCTCATGCTAATGCTGCTGTAGTTCTGTCAGCCGTCAAGGTTCTTATGAAGTACATTGAGATTATGACACCTTCCTCAACCTATGTGCAGAACCTCATCAAGAAACTGTCTCCTCCACTTGTAACCTTGTTGTCGAGTGAACCTGAGGTCCAGTATGTTGCACTTAGGAATATAAACTTGATTGTGCAGAAAAGAGCTGACATCCTcaagaatgaaatgaaagtgtTCTTTGTGAAGTATAATGACCCAATTTATGTAAAACTTGAGAAGTTGGACATTATGATCAGACTTGCAAACCAACAGAACATTGCTCAAGTACTAGCAGAGTTGAAAGAATATGCTACTGAAGTTGATGTAGATTTTGTCAGAAAGTCAGTGCGTGCTATTGGACGTTGTGCTATCAAGGTCGAGCAATCTGCTGAACGCTGTGTGAGCACATTGTTAGACTTGATTCAGACCAAAGTCAATTACGTGGTACAAGAAGCTATTATTGTCATCAAGGATATCTTCAGGAAGTACCCTAACAAATATGAGAGTATAATCTCCACATTGTGTGAGAACCTGGATTCCTTAGATGAACCCGAGGCAAGAGCATCAATGATTTGGATTATTGGTGAATACGCAGAAAGAATTGACAATGCTGCAGAATTGCTGGAGTCCTTTTTGGAAGGCTTCCAAGATGAAAATTCTCAGGTGCAATTGCAGCTTCTGACATCTATTGTGAAGCTGTTTTTAAAACGCCCAACAGACACGCAGGAGTTAGTGCAGCAGGTTCTAAGTTTAGCAACACAGGACAGTGACAATCCAGATCTGAGAGACAGGGGGTACATTTACTGGAGACTGCTGTCAACTGATCCTGTTGCTGCAAAGGAAGTAGTATTGGCAGAAAAGCCACTGATATCAGAGGAGACAGATCTCCTGGAACCAACCCTGTTGGATGAGCTCATCTGTAATATCTCAACACTAGCATCAGTCTATCACAAGCCACCAAGCTCATTTGTGGAAGGTCGCACAGCGGCAAGAAGGTTTACTTTGCCTCCAAGAGCTGAGCCAACGCCAGGAGCTGAAACGGAGGAAGCAGCGCCTGCTCCCCAACCAGTGGCTGCTCCTGCTGCTCCTCCAGCTGCTGCTCCCCCTTCAGCTGCACCATCCACTGACTCGCTGCTGGGGGATCTTCTGATGGACATTGGTCCTTCCCAACCTGTCTCTGCTCCAAGTATGGCTGCTACTCAGCAAGGAGCTCCAGGTGGTGGTGTCATGGATCTGTTGGGAGAAGACTTCAGTGGTTTGCAGCTTGGTGGTGGTCCAAGTCCTGCTCCACCTGCCATGGGAGGAGGTCTAGGTGATCTTTTCAGCTTATCAGGAGGAGTTGGTATGCCAGGTGGAATGTACTCAGCTCCTAAACAGGTCTGGCTTCCAGCTGTTAGGGGAAAAGGAGCTGAAGTATCAGGTAATACAACATTGATGGCCCTTCAGATCATAGGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35643	AP-1 complex subunit beta-1 OS=Mus musculus OX=10090 GN=Ap1b1 PE=1 SV=2
Q10567	AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=3
P52303	AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004172 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR026739 all species →	Family	AP complex subunit beta	Interproscan
IPR016342 all species →	Family	AP-1/2/4 complex subunit beta	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134 all species →	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12392	AP1B1; AP-1 complex subunit beta-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.