Gene detail

Detailed information of g6338.t1 in Montipora capitata

Genomic Location: Sc0000134:405754...422896
NR annotation: XP_029180573.2, CAD protein-like [Acropora millepora]
Species abbreviation MCAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g6338.t1

atggatatttacgagaaggagaatccagaaggtattattcttagcatgggaggacaattaccaaacaacatagccatgcagttgcacagacagcaggttcgcatcctgggtacctcgccagagatgattgacaatgcagagaatagatttaagttttcaagaatgttggacaacatcggaattttacagccacagtggaaagttctgacaactctggaggacgcaaaaaagttttgtgcaacagttgggtatccatgtcttgttcgaccttcctacgtgctgagtggtgcggccatgaatgttgcacactcggatcatgacctggtcacatatttggggaatgccaagtcagtatccagtgaacaccctgtggttatttcaaaattcatacagaatgctaaggagatagatgttgatgcagtagcttgtgatggtgaggttgtgatcatggcagtgtcagaacatgtggaaaatgctggagtgcattcaggtgatgctgcaatggttcttccaccacaagatttgaatgatgaaactctcaagaaaatacgcaagatctgctttgatgttgggcaagccttgatggtgactggaccgtttaacatgcagttgattgctaaatctaaaagtgaaatgctccccagtgtgcggacattacaagagcttggtttcaagttatatgctagtcctggcacagctgatttttatacagagcatgggattaagatcaaggctgtggattggccgtttgaggaaggtgggaatggtgccaatgagagaagtattctggactaccttgcgcaaaacaagtttgacatggtgatcaatctgccactcaggacttcaggctcgcgaagggcgtcatcttacataacccacggttaccgcacaaggcgcatggccatagacttctccatcccgctcatcacagatatcaagtgtgctaagctgtttattgaggccctgaaaagaatcggcggagcacccaaactgaagactcatatcgactgcatgtcatcaggccgtgtggttcgtttgcctggactcattgatgtgcacgtgcacatgcgtgaacctggcgctactcataaagaagatttctcatccgggacagctgctgctctggctggtggcgtgacaatggttttagccatgccaaatacaaatcccgccatagtgaatgagacatcctttaacttggctagaaagttggcttcagctggagctcgctgtgattatggcttgtatgctggcgccagttctgataactattctacagtgaaggacttggcgcatcaagcagccggacttaaaatgtacctcaatgagacgtttacgacactcagactggatgatatgtcaacgtggatgaagcatcttgagcactggccgaaacatttgccgcttgtatgtcacgctgaaggtcgcactactgcagctatcttgttactagcagagttagccgacagaccggtgcatatcgctcatgtggcgcgtaaagaagaggtgctcatcattcgcgctgcaaaagaaaaaggtattcaagtgacttgtgaagtgtctcctcatcatttgttcttaaccgaggatgactcggacaagatcggcccgaaaagagctggggtcaaaccaccgcttgtcaccgccgaggatcagaaggcgctctgggataacattgacgtcatcgattgcttcgccaccgatcatgcaccgcatacccttgaggagaaagactcggaaaaacctccgcctggttttccaggattagaaacgatgcttccgcttttgttgacagcagtgcatcaaggaagattgactattgatgacatcatccaacgcttgtgcacaaatccacgcaaaatcttcagtcttccagagcaaaaggatacttacgtagaagttgaaattggagaagagtggactatacccgccgctatgacatactccaaagcccagtggaccccatttgctggcatgaaggttaatggatgtgtcaggagagtcgtgatgagaggagaaactgttgtcattgatggcaaggtgcttgcagtgcctggttctggccaagacgttcgagttattgcctccgttccggcgccgccctcacaagtgtatcagccgcagcctcttgtgccgccagggagtccgaggaaggcagatagccgctggggttttcctccatccgtccttcggtttgtcgacacacattatggatcagagcctctggctctttcaactggagaggggactccagagtctgtacctcaatctcttcataccccacctctacctccccaggcaacgtcgccaggtggtccacattcacatataccgatgacatttccccgtgtgccacaccacgtgtttttaggtcaacacatattgagtgccagcaaattcaacagagatcagggcaaagtaatggcttctctattctatgaagtcagcacaagaacgtcttcctcgtttgctgcagcgatgcagagacttgggggctcagttatcttcatgaaggagaatgaatcctctgcaaagaagggagaaagcttggcagattctgtccaggttatgtcttcgtattgtgatgtggtcgttattcgtcatccgcagcccggtgcggttcaagaagttgcagagcactgccgcaaaccagtcataaacgcgggcgacggagtcggagaacatcctactcaggctcttttggacgtatttaccatccgcgaagagattggaactgtaaatcgtctgacggttactatggtcggggatttgaagaatggccgcactgttcactcgcttgctaaacttctctgcctctatgatgtcacgcttcgttacgtgtcaccagctgcactgcgcatgcctgactctgtaaaagagtatgttggactaaaaggaattcatcaggaagaatttcgaaaccttacggaggcccttcccgacacagatgtcctttacgtcaccaggatccagcgcgaaaggtttgaaagccaagaagaatacgagagggtgtttggaagttacgtaattacgccggagattctcacagaagctaaagagaagatggtggtgatgcatcctttgccacgagtgaatgaaatcagcgtggaagtggactcggatcctcgtgcagcatattttcgtcaagctgagtatggcatgtacgttagaatggctctgctagctcttgttttggtcaaaagctcgtaa

Transcript

g6338.t1

ATGGATATTTACGAGAAGGAGAATCCAGAAGGTATTATTCTTAGCATGGGAGGACAATTACCAAACAACATAGCCATGCAGTTGCACAGACAGCAGGTTCGCATCCTGGGTACCTCGCCAGAGATGATTGACAATGCAGAGAATAGATTTAAGTTTTCAAGAATGTTGGACAACATCGGAATTTTACAGCCACAGTGGAAAGTTCTGACAACTCTGGAGGACGCAAAAAAGTTTTGTGCAACAGTTGGGTATCCATGTCTTGTTCGACCTTCCTACGTGCTGAGTGGTGCGGCCATGAATGTTGCACACTCGGATCATGACCTGGTCACATATTTGGGGAATGCCAAGTCAGTATCCAGTGAACACCCTGTGGTTATTTCAAAATTCATACAGAATGCTAAGGAGATAGATGTTGATGCAGTAGCTTGTGATGGTGAGGTTGTGATCATGGCAGTGTCAGAACATGTGGAAAATGCTGGAGTGCATTCAGGTGATGCTGCAATGGTTCTTCCACCACAAGATTTGAATGATGAAACTCTCAAGAAAATACGCAAGATCTGCTTTGATGTTGGGCAAGCCTTGATGGTGACTGGACCGTTTAACATGCAGTTGATTGCTAAATCTAAAAGTGAAATGCTCCCCAGTGTGCGGACATTACAAGAGCTTGGTTTCAAGTTATATGCTAGTCCTGGCACAGCTGATTTTTATACAGAGCATGGGATTAAGATCAAGGCTGTGGATTGGCCGTTTGAGGAAGGTGGGAATGGTGCCAATGAGAGAAGTATTCTGGACTACCTTGCGCAAAACAAGTTTGACATGGTGATCAATCTGCCACTCAGGACTTCAGGCTCGCGAAGGGCGTCATCTTACATAACCCACGGTTACCGCACAAGGCGCATGGCCATAGACTTCTCCATCCCGCTCATCACAGATATCAAGTGTGCTAAGCTGTTTATTGAGGCCCTGAAAAGAATCGGCGGAGCACCCAAACTGAAGACTCATATCGACTGCATGTCATCAGGCCGTGTGGTTCGTTTGCCTGGACTCATTGATGTGCACGTGCACATGCGTGAACCTGGCGCTACTCATAAAGAAGATTTCTCATCCGGGACAGCTGCTGCTCTGGCTGGTGGCGTGACAATGGTTTTAGCCATGCCAAATACAAATCCCGCCATAGTGAATGAGACATCCTTTAACTTGGCTAGAAAGTTGGCTTCAGCTGGAGCTCGCtgtgattatggcttgtatgCTGGCGCCAGTTCTGATAACTATTCTACAGTGAAGGACTTGGCGCATCAAGCAGCCGGACTTAAAATGTACCTCAATGAGACGTTTACGACACTCAGACTGGATGATATGTCAACGTGGATGAAGCATCTTGAGCACTGGCCGAAACATTTGCCGCTTGTATGTCACGCTGAAGGTCGCACTACTGCAGCTATCTTGTTACTAGCAGAGTTAGCCGACAGACCGGTGCATATCGCTCATGTGGCGCGTAAAGAAGAGGTGCTCATCATTCGCGCTGCAAAAGAAAAAGGTATTCAAGTGACTTGTGAAGTGTCTCCTCATCATTTGTTCTTAACCGAGGATGACTCGGACAAGATCGGCCCGAAAAGAGCTGGGGTCAAACCACCGCTTGTCACCGCCGAGGATCAGAAGGCGCTCTGGGATAACATTGACGTCATCGATTGCTTCGCCACCGATCATGCACCGCATACCCTTGAGGAGAAAGACTCGGAAAAACCTCCGCCTGGTTTTCCAGGATTAGAAACGATGCTTCCGCTTTTGTTGACAGCAGTGCATCAAGGAAGATTGACTATTGATGACATCATCCAACGCTTGTGCACAAATCCACGCAAAATCTTCAGTCTTCCAGAGCAAAAGGATACTTACGTAGAAGTTGAAATTGGAGAAGAGTGGACTATACCCGCCGCTATGACATACTCCAAAGCCCAGTGGACCCCATTTGCTGGCATGAAGGTTAATGGATGTGTCAGGAGAGTCGTGATGAGAGGAGAAACTGTTGTCATTGATGGCAAGGTGCTTGCAGTGCCTGGTTCTGGCCAAGACGTTCGAGTTATTGCCTCCGTTCCGGCGCCGCCCTCACAAGTGTATCAGCCGCAGCCTCTTGTGCCGCCAGGGAGTCCGAGGAAGGCAGATAGCCGCTGGGGTTTTCCTCCATCCGTCCTTCGGTTTGTCGACACACATTATGGATCAGAGCCTCTGGCTCTTTCAACTGGAGAGGGGACTCCAGAGTCTGTACCTCAATCTCTTCATACCCCACCTCTACCTCCCCAGGCAACGTCGCCAGGTGGTCCACATTCACATATACCGATGACATTTCCCCGTGTGCCACACCACGTGTTTTTAGGTCAACACATATTGAGTGCCAGCAAATTCAACAGAGATCAGGGCAAAGTAATGGCTTCTCTATTCTATGAAGTCAGCACAAGAACGTCTTCCTCGTTTGCTGCAGCGATGCAGAGACTTGGGGGCTCAGTTATCTTCATGAAGGAGAATGAATCCTCTGCAAAGAAGGGAGAAAGCTTGGCAGATTCTGTCCAGGTTATGTCTTCGTATTGTGATGTGGTCGTTATTCGTCATCCGCAGCCCGGTGCGGTTCAAGAAGTTGCAGAGCACTGCCGCAAACCAGTCATAAACGCGGGCGACGGAGTCGGAGAACATCCTACTCAGGCTCTTTTGGACGTATTTACCATCCGCGAAGAGATTGGAACTGTAAATCGTCTGACGGTTACTATGGTCGGGGATTTGAAGAATGGCCGCACTGTTCACTCGCTTGCTAAACTTCTCTGCCTCTATGATGTCACGCTTCGTTACGTGTCACCAGCTGCACTGCGCATGCCTGACTCTGTAAAAGAGTATGTTGGACTAAAAGGAATTCATCAGGAAGAATTTCGAAACCTTACGGAGGCCCTTCCCGACACAGATGTCCTTTACGTCACCAGGATCCAGCGCGAAAGGTTTGAAAGCCAAGAAGAATACGAGAGGGTGTTTGGAAGTTACGTAATTACGCCGGAGATTCTCACAGAAGCTAAAGAGAAGATGGTGGTGATGCATCCTTTGCCACGAGTGAATGAAATCAGCGTGGAAGTGGACTCGGATCCTCGTGCAGCATATTTTCGTCAAGCTGAGTATGGCATGTACGTTAGAATGGCTCTGCTAGCTCTTGTTTTGGTCAAAAGCTCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91437	Multifunctional protein CAD OS=Squalus acanthias OX=7797 GN=CAD PE=2 SV=1
P08955	Multifunctional protein CAD OS=Mesocricetus auratus OX=10036 GN=CAD PE=1 SV=4
B2RQC6	Multifunctional protein CAD OS=Mus musculus OX=10090 GN=Cad PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001107 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00185 all species →	OTCace	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	Domain	Interproscan
PF02729 all species →	OTCace_N	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	Domain	Interproscan
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF02142 all species →	MGS	MGS-like domain	Domain	Interproscan
PF01979 all species →	Amidohydro_1	Amidohydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036914 all species →	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan
IPR006131 all species →	Domain	Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain	Interproscan
IPR036901 all species →	Homologous_superfamily	Aspartate/ornithine carbamoyltransferase superfamily	Interproscan
IPR011607 all species →	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR006132 all species →	Domain	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR006130 all species →	Family	Aspartate/ornithine carbamoyltransferase	Interproscan
IPR002195 all species →	Conserved_site	Dihydroorotase, conserved site	Interproscan
IPR011059 all species →	Homologous_superfamily	Metal-dependent hydrolase, composite domain superfamily	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR006680 all species →	Domain	Amidohydrolase-related	Interproscan
IPR002082 all species →	Family	Aspartate carbamoyltransferase	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR032466 all species →	Homologous_superfamily	Metal-dependent hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45753 all species →	ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0016597 all species →	Molecular Function	amino acid binding	Interproscan
GO:0016743 all species →	Molecular Function	carboxyl- or carbamoyltransferase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016812 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	Interproscan
GO:0016810 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0004070 all species →	Molecular Function	aspartate carbamoyltransferase activity	Interproscan
GO:0006207 all species →	Biological Process	'de novo' pyrimidine nucleobase biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11540	CAD; carbamoyl-phosphate synthase / aspartate carbamoyltransferase / dihydroorotase	EC:6.3.5.5 EC:2.1.3.2 EC:3.5.2.3	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.