Gene detail

Detailed information of g6366.t1 in Acropora digitifera

Genomic Location: chr3Alt:17565598...17569588
NR annotation: XP_015773023.1, PREDICTED: F-box/LRR-repeat protein 17-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g6366.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

30.6Max TPM

23.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	23.14	30.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	30.61
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	30.26
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	28.96
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	27.93
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	26.89
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	26.16
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	26.12
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	26.04
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	25.82
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	25.00
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	24.75
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	24.70
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	24.04
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	23.73
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	23.69
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	23.56
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	23.53
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	23.52
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	22.65
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	22.47
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	22.34
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	22.31
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	22.27
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	22.09
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	22.01
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	21.52
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	21.49
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	21.06
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	20.97
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	20.91
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	20.67
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	20.50
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	20.06
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	19.99
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	19.92
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	19.48
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	19.34
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	18.07
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	17.09

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.