Gene detail

Detailed information of g64.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: WP_227368013.1, UDP-3-O-acyl-N-acetylglucosamine deacetylase [Halomonas sp. M20]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1D2K0	UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=lpxC PE=3 SV=1
Q5R0M7	UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=lpxC PE=3 SV=1
Q12SC1	UDP-3-O-acyl-N-acetylglucosamine deacetylase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=lpxC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000102 (this species only)
Orthogroup (gene family)	OG0000255 (this species only)
Orthogroup (gene family)	OG0001085 (this species only)
Orthogroup (gene family)	OG0002495 (this species only)
Orthogroup (gene family)	OG0004754 (this species only)
Orthogroup (gene family)	OG0007953 (this species only)
Orthogroup (gene family)	OG0010492 (this species only)
Orthogroup (gene family)	OG0012677 (this species only)
Orthogroup (gene family)	OG0015707 (this species only)
Orthogroup (gene family)	OG0019275 (this species only)
Orthogroup (gene family)	OG0021358 (this species only)
Orthogroup (gene family)	OG0036219 (this species only)
Orthogroup (gene family)	OG0080524 (this species only)
Orthogroup (gene family)	OG0171872 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932 all species →	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF09229 all species →	Aha1_N	Activator of Hsp90 ATPase, N-terminal	Domain	Interproscan
PF13895 all species →	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03331 all species →	LpxC	UDP-3-O-acyl N-acetylglycosamine deacetylase	Family	Interproscan
PF00691 all species →	OmpA	OmpA family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR052642 all species →	Family	Coiled-coil and Forkhead-associated domain-containing protein	Interproscan
IPR018000 all species →	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR006028 all species →	Family	Gamma-aminobutyric acid A receptor/Glycine receptor alpha	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR006201 all species →	Family	Neurotransmitter-gated ion-channel	Interproscan
IPR006029 all species →	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR015310 all species →	Domain	Activator of Hsp90 ATPase AHSA1-like, N-terminal	Interproscan
IPR036338 all species →	Homologous_superfamily	Activator of Hsp90 ATPase, Aha1	Interproscan
IPR050577 all species →	Family	Cytochrome b5/MAPR and VMP1 families	Interproscan
IPR052598 all species →	Family	Immunoglobulin superfamily CEA-related	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036737 all species →	Homologous_superfamily	OmpA-like domain superfamily	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR015870 all species →	Homologous_superfamily	UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal	Interproscan
IPR004463 all species →	Family	UDP-3-O-acyl N-acetylglucosamine deacetylase	Interproscan
IPR006665 all species →	Domain	OmpA-like domain	Interproscan
IPR011334 all species →	Homologous_superfamily	UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal	Interproscan
IPR006664 all species →	Domain	Outer membrane protein, bacterial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18853 all species →	FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED	Interproscan
PTHR18945 all species →	NEUROTRANSMITTER GATED ION CHANNEL	Interproscan
PTHR10281 all species →	MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED	Interproscan
PTHR44337 all species →	CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR33694 all species →	UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0034220 all species →	Biological Process	monoatomic ion transmembrane transport	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005231 all species →	Molecular Function	excitatory extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0005254 all species →	Molecular Function	chloride channel activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007268 all species →	Biological Process	chemical synaptic transmission	Interproscan
GO:0030594 all species →	Molecular Function	neurotransmitter receptor activity	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0045202 all species →	Cellular Component	synapse	Interproscan
GO:0050877 all species →	Biological Process	nervous system process	Interproscan
GO:1902476 all species →	Biological Process	chloride transmembrane transport	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0008759 all species →	Molecular Function	obsolete UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity	Interproscan
GO:0009245 all species →	Biological Process	lipid A biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11498	CENPE, KIF10; centromeric protein E	-	Chromosome and associated proteins	ko03036	deepkoala
K21248	VMP1; vacuole membrane protein 1	-	Autophagy - animal	ko04140	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.